Publication:
Investigating hepatic fibrosis heterogeneity by three-dimensional imaging in metabolic dysfunction-associated steatotic liver disease

dc.contributor.coauthorAydin, Musa
dc.contributor.coauthorDemirtas, Elif
dc.contributor.coauthorErkan, Mert
dc.contributor.coauthorSheth, Abhishek
dc.contributor.coauthorAithal, Guruprasad Padur
dc.contributor.coauthorKirimlioglu, Hale
dc.contributor.coauthorDayangac, Murat
dc.contributor.coauthorFerhanoglu, Onur
dc.contributor.departmentSchool of Medicine
dc.contributor.departmentDepartment of Physics
dc.contributor.departmentGraduate School of Health Sciences
dc.contributor.kuauthorYiğit Alpdoğan, Buket
dc.contributor.kuauthorÖzgönül, Ekin
dc.contributor.kuauthorYaman, Ömer
dc.contributor.kuauthorSipahioğlu, Tarık
dc.contributor.kuauthorUlukan, Bürge
dc.contributor.kuauthorTaş, Yağmur Çetin
dc.contributor.kuauthorMorova, Berna
dc.contributor.kuauthorUysallı, Yiğit
dc.contributor.kuauthorTellioğlu, Gürkan
dc.contributor.kuauthorAtak, Dila
dc.contributor.kuauthorÖzdemir, Yasemin Gürsoy
dc.contributor.kuauthorKarahüseyinoğlu, Serçin
dc.contributor.kuauthorYurdaydın, Cihan
dc.contributor.kuauthorAkyıldız, Murat
dc.contributor.kuauthorKiraz, Alper
dc.contributor.kuauthorZeybel, Müjdat
dc.contributor.kuauthorDemirtaş, Elif
dc.contributor.schoolcollegeinstituteSchool of Medicine
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.date.accessioned2025-09-10T04:58:43Z
dc.date.available2025-09-09
dc.date.issued2025
dc.description.abstractAlthough liver biopsy is a well-established technique to assess fibrosis it has several limitations, including invasive nature, semi-quantitative assessment methods, significant sampling and observer variability, making precise assessment of hepatic fibrosis challenging. Accurate and reliable modalities are crucial for clinical trials to characterize hepatic fibrosis monitorization effectively. We aimed to perform 3-dimensional imaging of optically transparent liver samples by light-sheet microscopy (LSM) to quantify extracellular matrix (ECM) proteins. Fifty-seven MASLD, thirty-eight chronic hepatitis patients and twelve healthy individuals were included. Liver tissues were cleared with a CLARITY method. 3D imaging of ECM was performed via the newly developed LSM. Collagen Proportionate Volume (CPV) and Elastin Proportionate Volume (EPV) values were calculated by analysis of over 200 sections per sample through morphometry. We have optimized a method which achieves transparency of liver tissues in advanced fibrotic stages of MASLD and optimized non-destructive slide-free fibrosis pathology of whole fresh and FFPE liver biopsy samples. Cut-off values for CPV and EPV were established for fibrotic stages. CPV and EPV analysis showed a considerable optical section heterogeneity resulting in a fibrosis stage of variance within the sample. Volumetric image analysis for fibrosis staging revealed that only 44% and 47% of optical sections would be staged the same for F3 and F4, respectively. For the first time, our findings demonstrate a novel method of analyzing 3D digital pathology of liver fibrosis using in-house LSM. Volumetric imaging of whole liver biopsy samples showed that fibrosis heterogeneity occurs even in different sections.
dc.description.fulltextYes
dc.description.harvestedfromManual
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.openaccessGold OA
dc.description.publisherscopeInternational
dc.description.readpublishN/A
dc.description.sponsoredbyTubitakEuTÜBİTAK
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TÜBİTAK) 1001 grant [117S440]; Turkish Academy of Sciences (TUBA); Republic of Turkey Ministry of Development Research Infrastructure Support Program
dc.description.versionPublished Version
dc.description.volume15
dc.identifier.doi10.1038/s41598-025-98680-y
dc.identifier.embargoNo
dc.identifier.filenameinventorynoIR06455
dc.identifier.grantno117S440
dc.identifier.issn2045-2322
dc.identifier.issue1
dc.identifier.pubmed40596658
dc.identifier.quartileQ1
dc.identifier.scopus2-s2.0-105009617321
dc.identifier.urihttps://doi.org/10.1038/s41598-025-98680-y
dc.identifier.urihttps://hdl.handle.net/20.500.14288/30356
dc.identifier.wos001523001700037
dc.keywordsLiver fibrosis
dc.keywordsSlide-free pathology
dc.keywordsCLARITY
dc.keywords3D imaging
dc.keywordsMASLD
dc.language.isoeng
dc.publisherNature Portfolio
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofScientific Reports
dc.relation.openaccessYes
dc.rightsCC BY-NC-ND (Attribution-NonCommercial-NoDerivs)
dc.rights.urihttps://creativecommons.org/licenses/by-nc-nd/4.0/
dc.subjectMedicine
dc.titleInvestigating hepatic fibrosis heterogeneity by three-dimensional imaging in metabolic dysfunction-associated steatotic liver disease
dc.typeJournal Article
dspace.entity.typePublication
person.familyNameYiğit Alpdoğan
person.familyNameÖzgönül
person.familyNameYaman
person.familyNameSipahioğlu
person.familyNameUlukan
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person.familyNameMorova
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person.givenNameYasemin Gürsoy
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person.givenNameCihan
person.givenNameMurat
person.givenNameAlper
person.givenNameMüjdat
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