Publication:
Investigating hepatic fibrosis heterogeneity by three-dimensional imaging in metabolic dysfunction-associated steatotic liver disease

dc.contributor.coauthorYigit, Buket
dc.contributor.coauthorOzgonul, Ekin
dc.contributor.coauthorYaman, Omer
dc.contributor.coauthorSipahioglu, Tarik
dc.contributor.coauthorUlukan, Burge
dc.contributor.coauthorCetin Tas, Yagmur
dc.contributor.coauthorMorova, Berna
dc.contributor.coauthorAydin, Musa
dc.contributor.coauthorUysalli, Yigit
dc.contributor.coauthorDemirtas, Elif
dc.contributor.coauthorErkan, Mert
dc.contributor.coauthorTellioglu, Gurkan
dc.contributor.coauthorAtak, Dila
dc.contributor.coauthorGursoy Ozdemir, Yasemin
dc.contributor.coauthorKarahuseyinoglu, Sercin
dc.contributor.coauthorYurdaydin, Cihan
dc.contributor.coauthorAkyildiz, Murat
dc.contributor.coauthorSheth, Abhishek
dc.contributor.coauthorAithal, Guruprasad Padur
dc.contributor.coauthorKirimlioglu, Hale
dc.contributor.coauthorDayangac, Murat
dc.contributor.coauthorFerhanoglu, Onur
dc.contributor.coauthorKiraz, Alper
dc.contributor.coauthorZeybel, Muejdat
dc.contributor.departmentSchool of Medicine
dc.contributor.departmentDepartment of Physics
dc.contributor.departmentGraduate School of Health Sciences
dc.contributor.kuauthorResearcher, Yiğit Alpdoğan, Buket
dc.contributor.kuauthorPhD Student, Özgönül, Ekin
dc.contributor.kuauthorPhD Student, Yaman, Ömer
dc.contributor.kuauthorPhD Student, Sipahioğlu, Tarık
dc.contributor.kuauthorPhD Student, Ulukan, Bürge
dc.contributor.kuauthorResearcher, Taş, Yağmur Çetin
dc.contributor.kuauthorResearcher, Morova, Berna
dc.contributor.kuauthorPhD Student, Uysallı, Yiğit
dc.contributor.kuauthorFaculty Member, Tellioğlu, Gürkan
dc.contributor.kuauthorResearcher, Atak, Dila
dc.contributor.kuauthorFaculty Member, Özdemir, Yasemin Gürsoy
dc.contributor.kuauthorFaculty Member, Karahüseyinoğlu, Serçin
dc.contributor.kuauthorDoctor, Yurdaydın, Cihan
dc.contributor.kuauthorFaculty Member, Akyıldız, Murat
dc.contributor.kuauthorFaculty Member, Kiraz, Alper
dc.contributor.kuauthorFaculty Member, Zeybel, Müjdat
dc.contributor.schoolcollegeinstituteSchool of Medicine
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.date.accessioned2025-09-10T04:58:43Z
dc.date.available2025-09-09
dc.date.issued2025
dc.description.abstractAlthough liver biopsy is a well-established technique to assess fibrosis it has several limitations, including invasive nature, semi-quantitative assessment methods, significant sampling and observer variability, making precise assessment of hepatic fibrosis challenging. Accurate and reliable modalities are crucial for clinical trials to characterize hepatic fibrosis monitorization effectively. We aimed to perform 3-dimensional imaging of optically transparent liver samples by light-sheet microscopy (LSM) to quantify extracellular matrix (ECM) proteins. Fifty-seven MASLD, thirty-eight chronic hepatitis patients and twelve healthy individuals were included. Liver tissues were cleared with a CLARITY method. 3D imaging of ECM was performed via the newly developed LSM. Collagen Proportionate Volume (CPV) and Elastin Proportionate Volume (EPV) values were calculated by analysis of over 200 sections per sample through morphometry. We have optimized a method which achieves transparency of liver tissues in advanced fibrotic stages of MASLD and optimized non-destructive slide-free fibrosis pathology of whole fresh and FFPE liver biopsy samples. Cut-off values for CPV and EPV were established for fibrotic stages. CPV and EPV analysis showed a considerable optical section heterogeneity resulting in a fibrosis stage of variance within the sample. Volumetric image analysis for fibrosis staging revealed that only 44% and 47% of optical sections would be staged the same for F3 and F4, respectively. For the first time, our findings demonstrate a novel method of analyzing 3D digital pathology of liver fibrosis using in-house LSM. Volumetric imaging of whole liver biopsy samples showed that fibrosis heterogeneity occurs even in different sections.
dc.description.fulltextYes
dc.description.harvestedfromManual
dc.description.indexedbyWOS
dc.description.indexedbyPubMed
dc.description.openaccessGold OA
dc.description.publisherscopeInternational
dc.description.readpublishN/A
dc.description.sponsoredbyTubitakEuTÜBİTAK
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TÜBİTAK) 1001 grant [117S440]; Turkish Academy of Sciences (TUBA); Republic of Turkey Ministry of Development Research Infrastructure Support Program
dc.description.versionPublished Version
dc.description.volume15
dc.identifier.doi10.1038/s41598-025-98680-y
dc.identifier.embargoNo
dc.identifier.filenameinventorynoIR06455
dc.identifier.issn2045-2322
dc.identifier.issue1
dc.identifier.quartileN/A
dc.identifier.urihttps://doi.org/10.1038/s41598-025-98680-y
dc.identifier.urihttps://hdl.handle.net/20.500.14288/30356
dc.identifier.wos001523001700037
dc.keywordsLiver fibrosis
dc.keywordsSlide-free pathology
dc.keywordsCLARITY
dc.keywords3D imaging
dc.keywordsMASLD
dc.language.isoeng
dc.publisherNature Portfolio
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofScientific reports
dc.relation.openaccessYes
dc.rightsCC BY-NC-ND (Attribution-NonCommercial-NoDerivs)
dc.rights.urihttps://creativecommons.org/licenses/by-nc-nd/4.0/
dc.subjectMultidisciplinary Sciences
dc.titleInvestigating hepatic fibrosis heterogeneity by three-dimensional imaging in metabolic dysfunction-associated steatotic liver disease
dc.typeJournal Article
dspace.entity.typePublication
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