Publication:
Benchmarking ultra-low attachment and photopatterned GelMA 3D culture platforms for modeling cancer stemness in high-grade serous ovarian cancer

dc.contributor.departmentGraduate School of Health Sciences
dc.contributor.departmentSchool of Medicine
dc.contributor.departmentKUTTAM (Koç University Research Center for Translational Medicine)
dc.contributor.departmentKUH (Koç University Hospital)
dc.contributor.kuauthorDemirel, Deren
dc.contributor.kuauthorOğuz, Ferdi
dc.contributor.kuauthorCanıtez, İdil Su
dc.contributor.kuauthorYılmaz, Gizem
dc.contributor.kuauthorAydın, Elif Merve
dc.contributor.kuauthorKayış, Merve
dc.contributor.kuauthorGiray, Burak
dc.contributor.kuauthorVatansever, Doğan
dc.contributor.kuauthorTaşkıran, Çağatay
dc.contributor.kuauthorSokullu, Emel
dc.contributor.kuauthorŞahin, İrem Durmaz
dc.contributor.schoolcollegeinstituteSCHOOL OF MEDICINE
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF HEALTH SCIENCES
dc.contributor.schoolcollegeinstituteKUH (KOÇ UNIVERSITY HOSPITAL)
dc.contributor.schoolcollegeinstituteResearch Center
dc.date.accessioned2026-08-31T12:32:06Z
dc.date.issued2026
dc.description.abstractHigh‐grade serous ovarian cancer (HGSOC) exhibits pronounced intratumoral heterogeneity and chemoresistance, demanding experimental platforms that more accurately recapitulate stemness‐driven relapse. Despite increasing use of three‐dimensional (3D) systems in cancer research, their comparative translational performance in ovarian cancer remains unclear. Here, we systematically benchmark two scalable 3D platforms, scaffold‐free ultra‐low attachment (ULA) spheroids and extracellular matrix mimetic photopatterned gelatin methacryloyl (GelMA) hydrogels, using HGSOC cell lines and patient‐derived primary samples. Under matched conditions, both systems enhanced cancer stem cell (CSC) associated phenotypes relative to 2D culture, including induction of stemness markers, CSC surface populations, epithelial to mesenchymal transition signatures, and drug resistance. ULA enabled long‐term spheroid maturation and robust expansion of intrinsically stem‐like populations, whereas GelMA photopatterning provided spatially defined microenvironmental control that promoted rapid and uniform spheroid formation and efficiently induced stem‐like traits in low‐stemness models. Notably, baseline SOX2 expression partially correlated with chemoresistance, supporting the biological relevance of CSC enriched platforms. Collectively, this platform level comparison establishes complementary, biotechnology driven strategies for reproducible modeling of HGSOC stemness and therapy resistance, with implications for translational drug evaluation and precision oncology.
dc.description.harvestedfromManual
dc.description.indexedbyPubMed
dc.description.indexedbyScopus
dc.description.publisherscopeInternational
dc.description.readpublishWiley RP
dc.description.sponsoredbyTubitakEuN/A
dc.description.sponsorshipN/A
dc.description.versionPublished Version
dc.identifier.ScopusPercentile59
dc.identifier.ScopusQuartileQ2
dc.identifier.WoSPercentile68.8
dc.identifier.WoSQuartileQ2
dc.identifier.doi10.1002/biot.70287
dc.identifier.eissn1860-7314
dc.identifier.embargoN/A
dc.identifier.endpage-
dc.identifier.grantnoN/A
dc.identifier.issn1860-6768
dc.identifier.issue7
dc.identifier.pubmed42528220
dc.identifier.scopus2-s2.0-105046199460
dc.identifier.startpage-
dc.identifier.urihttp://dx.doi.org/10.1002/biot.70287
dc.identifier.urihttps://hdl.handle.net/20.500.14288/34833
dc.identifier.volume21
dc.keywordsSOX2
dc.keywordsOvarian cancer
dc.keywordsSerous ovarian cancer
dc.keywordsSpheroid
dc.keywordsSerous fluid
dc.keywordsExtracellular matrix
dc.keywordsCancer
dc.keywordsCancer stem cell
dc.keywordsCell culture
dc.languageeng
dc.publisherWiley
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofBiotechnology Journal
dc.subjectHealth sciences
dc.subjectMedicine
dc.subjectOncology
dc.subjectPhysical sciences
dc.subjectEngineering
dc.subjectBiomedical engineering
dc.subjectLife sciences
dc.subjectBiochemistry
dc.subjectGenetics and molecular biology
dc.subjectMolecular biology
dc.titleBenchmarking ultra-low attachment and photopatterned GelMA 3D culture platforms for modeling cancer stemness in high-grade serous ovarian cancer
dc.typeJournal Article
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