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Permanent URI for this collectionhttps://hdl.handle.net/20.500.14288/3
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Publication Metadata only End-to-end deep multi-modal physiological authentication with smartbands(IEEE-Inst Electrical Electronics Engineers Inc, 2021) Ekiz, Deniz; Dardağan, Yağmur Ceren; Aydar, Furkan; Köse, Rukiye Dilruba; Ersoy, Cem; N/A; Can, Yekta Said; Researcher; College of Social Sciences and Humanities; N/AThe number of fitness tracker users increases every day. Most of the applications require authentication to protect privacy-preserving operations. Biometrics such as face images have been used widely as login tokens, but they have privacy issues. Moreover, occlusions like face masks used for COVID may reduce their effectiveness. Smartbands can track heart rate, movements, and electrodermal activities. They have been widely used for health-related applications. The use of smartbands for authentication is in the exploratory stage. Physiological signals gathered from smartbands may be used to create a multi-modal and multi-sensor authentication system. The popularity of smartbands enables us to deploy new applications without a need to buy additional hardware. In this study, we explore the multi-modal physiological biometrics with end-to-end deep learning and feature-based traditional systems. We collected multi-modal physiological data of 80 people for five days using modern smartbands. We applied a deep learning approach to the multi-modal physiological data and used feature-based traditional machine learning classifiers. The CNN-LSTM model achieved a 9.31% equal error rate and outperformed other models in terms of authentication performance.Publication Metadata only Optical modulation with silicon microspheres(IEEE-Inst Electrical Electronics Engineers Inc, 2009) Gürlü, Oğuzhan; N/A; Department of Physics; Yüce, Emre; Serpengüzel, Ali; Master Student; Faculty Member; Department of Physics; Graduate School of Sciences and Engineering; College of Sciences; 245435; 27855In this letter, a silicon microsphere coupled to a silica optical fiber half coupler has been characterized for electrooptical modulation in the L-band at 1.55 mu m. Electrooptical modulation of the transmitted and the 90 degrees elastic scattered signals for both the TE and the TM polarizations of the microsphere resonances has been observed.Publication Metadata only Silk as a biodegradable resist for field-emission scanning probe lithography(Institute of Physics (IOP) Publishing, 2020) Sadeghi, Sadra; Rangelow, Ivo W.; Department of Mechanical Engineering; Department of Electrical and Electronics Engineering; N/A; N/A; Department of Electrical and Electronics Engineering; Alaca, Burhanettin Erdem; Kumar, Baskaran Ganesh; Melikov, Rustamzhon; Doğru-Yüksel, Itır Bakış; Nizamoğlu, Sedat; Faculty Member; Other; PhD Student; PhD Student; Faculty Member; Department of Mechanical Engineering; Department of Electrical and Electronics Engineering; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştirmalari Merkezi (KUYTAM); N/A; N/A; N/A; N/A; College of Engineering; College of Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; College of Engineering; 115108; N/A; N/A; N/A; 130295The patterning of silk allows for manufacturing various structures with advanced functionalities for optical and tissue engineering and drug delivery applications. Here, we propose a high-resolution nanoscale patterning method based on field-emission scanning probe lithography (FE-SPL) that crosslinks the biomaterial silk on conductive indium tin oxide (ITO) promoting the use of a biodegradable material as resist and water as a developer. During the lithographic process, Fowler-Nordheim electron emission from a sharp tip was used to manipulate the structure of silk fibroin from random coil to beta sheet and the emission formed nanoscale latent patterns with a critical dimension (CD) of similar to 50 nm. To demonstrate the versatility of the method, we patterned standard and complex shapes. This method is particularly attractive due to its ease of operation without relying on a vacuum or a special gaseous environment and without any need for complex electronics or optics. Therefore, this study paves a practical and cost-effective way toward patterning biopolymers at ultra-high level resolution.Publication Metadata only Antibacterial silicone-urea/organoclay nanocomposites(Springer, 2009) Department of Chemistry; N/A; N/A; Department of Chemistry; Yılgör, Emel; Nugay, Işık Işıl; Bakan, Murat; Yılgör, İskender; Researcher; Undergraduate Student; Undergraduate Student; Faculty Member; Department of Chemistry; College of Sciences; College of Engineering; College of Engineering; College of Sciences; N/A; N/A; N/A; 24181Montmorillonite modified with distearyldimethyl ammonium chloride (C18-QAC) (Nanofil-15) (NF15) was incorporated into polydimethylsiloxane-urea (silicone-urea, PSU) copolymers. PSU was obtained by the reaction of equimolar amounts of aminopropyl terminated polydimethylsiloxane (PDMS) oligomer (= 3,200 g/mol) and bis(4-isocyanatohexyl) methane (HMDI). A series of PSU/NF15 nanocomposites were prepared by solution blending with organoclay loadings ranging from 0.80 to 9.60% by weight, corresponding to 0.30 to 3.60% C18-QAC. Colloidal dispersions of organophilic clay (NF15) in isopropanol were mixed with the PSU solution in isopropanol and were subjected to ultrasonic treatment. Composite films were obtained by solution casting. FTIR spectroscopy confirmed that the organoclay mainly interacted with the urea groups but not with PDMS. XRD analysis showed that nanocomposites containing up to 6.40% by weight of organoclay had fully exfoliated silicate layers in the polymer matrix, whereas 9.60% loading had an intercalated structure. Physicochemical properties of nanocomposites were determined. PSU/NF15 nanocomposites displayed excellent long-term antibacterial properties against E. coli.Publication Metadata only FRET lasing from self-assembled DNA tetrahedral nanostructures suspended in optofluidic droplet resonators(Springer, 2014) Jonas, A.; Liu, H.; Fan, C.; Chen, Q.; Fan, X.; Department of Physics; N/A; N/A; Kiraz, Alper; Özelci, Ersan; Aas, Mehdi; Faculty Member; PhD Student; PhD Student; Department of Physics; College of Sciences; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; 22542; N/A; N/AWe demonstrate Förster resonance energy transfer (FRET) lasing from self-assembled tetrahedral DNA complexes labeled with Cy3 and Cy5 dyes and suspended as a gain medium in aqueous microdroplet cavities deposited on a superhydrophobic surface. Threshold fluence and differential efficiency are characterized for DNA complexes containing 1Cy3-3Cy5 and 3Cy3-1Cy5. We demonstrate that at a constant Cy5 concentration, average threshold fluence is reduced 3 to 8 times and average differential efficiency is enhanced 6 to 30 times for 3Cy3-1Cy5 as compared to 1Cy3-3Cy5. Using 3Cy3-1Cy5 nanostructures, FRET lasing is observed at very low concentrations down to ∼ 1 μM. This work shows that optofluidic microlasers based on droplet resonators can be combined with DNA nanotechnology to explore applications in bio/chemical sensing and novel photonic devices.Publication Metadata only Structural changes in a Schiff base molecular assembly initiated by scanning tunneling microscopy tip(Institute of Physics (IOP) Publishing, 2016) Tomak, A.; Bacaksiz, C.; Mendirek, G.; Sahin, H.; Hur, D.; Gorgun, K.; Senger, R. T.; Peeters, F. M.; Zareie, H. M.; N/A; Birer, Özgür; Researcher; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); N/A; N/AWe report the controlled self-organization and switching of newly designed Schiff base (E)-4-((4-(phenylethynyl) benzylidene) amino) benzenethiol (EPBB) molecules on a Au (111) surface at room temperature. Scanning tunneling microscopy and spectroscopy (STM/STS) were used to image and analyze the conformational changes of the EPBB molecules. The conformational change of the molecules was induced by using the STM tip while increasing the tunneling current. The switching of a domain or island of molecules was shown to be induced by the STM tip during scanning. Unambiguous fingerprints of the switching mechanism were observed via STM/STS measurements. Surface-enhanced Raman scattering was employed, to control and identify quantitatively the switching mechanism of molecules in a monolayer. Density functional theory calculations were also performed in order to understand the microscopic details of the switching mechanism. These calculations revealed that the molecular switching behavior stemmed from the strong interaction of the EPBB molecules with the STM tip. Our approach to controlling intermolecular mechanics provides a path towards the bottom-up assembly of more sophisticated molecular machines.Publication Metadata only A front tracking method for direct numerical simulation of evaporation process in a multiphase system(Academic Press Inc Elsevier Science, 2017) N/A; N/A; Department of Mechanical Engineering; Irfan, Muhammad; Muradoğlu, Metin; PhD Student; Faculty Member; Department of Mechanical Engineering; Graduate School of Sciences and Engineering; College of Engineering; N/A; 46561A front-tracking method is developed for the direct numerical simulation of evaporation process in a liquid-gas multiphase system. One-field formulation is used to solve the flow, energy and species equations in the framework of the front tracking method, with suitable jump conditions at the interface. Both phases are assumed to be incompressible; however, the divergence-free velocity field condition is modified to account for the phase-change/mass-transfer at the interface. Both temperature and species gradient driven evaporation/phase-change processes are simulated. For the species gradient driven phase change process, the Clausius-Clapeyron equilibrium relation is used to find the vapor mass fraction and subsequently the evaporation mass flux at the interface. A number of benchmark cases are first studied to validate the implementation. The numerical results are found to be in excellent agreement with the analytical solutions for all the studied cases. The methods are then applied to study the evaporation of a static as well as a single and two droplets systems falling in the gravitational field. The methods are demonstrated to be grid convergent and the mass is globally conserved during the phase change process for both the static and moving droplet cases.Publication Metadata only Nanoparticle based induction heating at low magnitudes of magnetic field strengths for breast cancer therapy(Elsevier, 2019) Zuvin, Merve; Koçak, Muhammed; Akkoç, Yunus; Kutlu, Özlem; Gözüaçık, Devrim; Koşar, Ali; N/A; Department of Chemistry; Ünal, Özlem; Acar, Havva Funda Yağcı; PhD Student; Faculty Member; Department of Chemistry; Graduate School of Sciences and Engineering; College of Sciences; N/A; 178902Magnetic hyperthermia has received much attention during the last decade due to its implementation in cancer treatment. Recently, functionalized superparamagnetic iron oxide nanoparticles (SPION) emerged as a strong alternative adjuvant treatment approach, which complements conventional methods such as chemotherapy. In this study, we demonstrate the anticancer effect of Poly(acrylic acid)-coated, anti-HER2-tagged SPIONs on breast cancer cells using a low magnetic field strength of 0.8 kAm(-1), which is significantly lower compared to the literature, with a frequency of 400 kHz. Specificity was achieved via anti-HER2 antibody attachment to nanoparticles. HER2-positive SKBR3 and MDA-MB-453 cell lines internalized the nanoparticles successfully. These nanoparticles, which were not toxic to these cell lines, led to a prominent decrease in cell proliferation and survival in MDA-MB-453 cells when subjected to hyperthermia. Therefore, the hyperthermia-targeted SPION approach could be developed as a potential cancer treatment approach against breast cancer and possible other cancer types.Publication Metadata only Environment-assisted modulation of heat flux in a bio-inspired system based on collision model(Mdpi, 2022) N/A; N/A; Department of Physics; Pedram, Ali; Müstecaplıoğlu, Özgür Esat; PhD Student; Faculty Member; Department of Physics; Graduate School of Sciences and Engineering; College of Sciences; N/A; 1674The high energy transfer efficiency of photosynthetic complexes has been a topic of research across many disciplines. Several attempts have been made in order to explain this energy transfer enhancement in terms of quantum mechanical resources such as energetic and vibration coherence and constructive effects of environmental noise. The developments in this line of research have inspired various biomimetic works aiming to use the underlying mechanisms in biological light harvesting complexes for the improvement of synthetic systems. In this article, we explore the effect of an auxiliary hierarchically structured environment interacting with a system on the steady-state heat transport across the system. The cold and hot baths are modeled by a series of identically prepared qubits in their respective thermal states, and we use a collision model to simulate the open quantum dynamics of the system. We investigate the effects of system-environment, inter-environment couplings and coherence of the structured environment on the steady state heat flux and find that such a coupling enhances the energy transfer. Our calculations reveal that there exists a non-monotonic and non-trivial relationship between the steady-state heat flux and the mentioned parameters.Publication Metadata only Reversible switching of wetting properties and erasable patterning of polymer surfaces using plasma oxidation and thermal treatment(Elsevier Science Bv, 2018) Soydan, Seren; Jonas, Alexander; N/A; Department of Chemistry; N/A; Department of Chemistry; Department of Physics; Department of Chemistry; Rashid, Muhammed Zeeshan; Atay, İpek; Yağcı, Mustafa Barış; Yılgör, Emel; Kiraz, Alper; Yılgör, İskender; PhD Student; Post Doctorate Student; Researcher; Researcher; Faculty Member; Faculty Member; Department of Physics; Department of Chemistry; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; N/A; College of Sciences; College of Sciences; College of Sciences; College of Sciences; N/A; N/A; N/A; N/A; 40527; 22542; 24181Polymer surfaces reversibly switchable from superhydrophobic to superhydrophilic by exposure to oxygen plasma and subsequent thermal treatment are demonstrated. Two inherently different polymers, hydrophobic segmented polydimethylsiloxane-urea copolymer (TPSC) and hydrophilic poly(methyl methacrylate) (PMMA) are modified with fumed silica nanoparticles to prepare superhydrophobic surfaces with roughness on nanometer to micrometer scale. Smooth TPSC and PMMA surfaces are also used as control samples. Regardless of their chemical structure and surface topography, all surfaces display completely reversible wetting behavior changing from hydrophobic to hydrophilic and back for many cycles upon plasma oxidation followed by thermal annealing. Influence of plasma power, plasma exposure time, annealing temperature and annealing time on the wetting behavior of polymeric surfaces are investigated. Surface compositions, textures and topographies are characterized by X-ray photoelectron spectroscopy (XPS), scanning electron microscopy (SEM) and white light interferometry (WLI), before and after oxidation and thermal annealing. Wetting properties of the surfaces are determined by measuring their static, advancing and receding water contact angle. We conclude that the chemical structure and surface topography of the polymers play a relatively minor role in reversible wetting behavior, where the essential factors are surface oxidation and migration of polymer molecules to the surface upon thermal annealing. Reconfigurable water channels on polymer surfaces are produced by plasma treatment using a mask and thermal annealing cycles. Such patterned reconfigurable hydrophilic regions can find use in surface microfluidics and optofluidics applications. (C) 2018 Elsevier B.V. All rights reserved.