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Permanent URI for this collectionhttps://hdl.handle.net/20.500.14288/3
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Publication Metadata only Determination of thyroglobulin levels by radioimmunoassay method in anti thyroglobulin positive differentiated thyroid patients: one center clinical experience(Pergamon-Elsevier Science Ltd, 2020) Uçar, Burcu; Şen, Melis; Acar, Tayfun; N/A; Demirkol, Mehmet Onur; Faculty Member; School of Medicine; 196946It is very crucial to determine Tg accurately and precisely in thyroid cancer cases. Although there are many studies on the detection of Tg in thyroid cases in the literature, there are no sufficient clinical studies examining many cases with different features by using RIA methodology. Here, a radiometric and chromatographic method has been studied for the first time to eliminate the interference from anti-Tg positive patients. In this paper, radioimmunoassay (RIA) and immunoradiometric (IRMA) techniques were used for the analysis of 302 sera collected from patients for Tg and TgAb quantification. By the RIA technique, a reliable result was obtained by calculating the real Tg value quantitatively in 41 patients showing TgAb positivity out of 208 patients. Our findings show that the RIA assay is the most suitable approach for detection of changeable (low or undetectable) Tg value and metastases detected by post-therapeutic imaging in early-stage DTC cases showing preoperative and postoperative TgAb positivity. The new immunoradiometric method allows the real (%) Tg value to be reached in a part of TgAb-positive DTC. Even if TgAb positive in the metastatic and nonmetastatic DTC patient group. This allows the accurate clinical follow-up of patients.Publication Metadata only Reversible switching of wetting properties and erasable patterning of polymer surfaces using plasma oxidation and thermal treatment(Elsevier Science Bv, 2018) Soydan, Seren; Jonas, Alexander; N/A; Department of Chemistry; N/A; Department of Chemistry; Department of Physics; Department of Chemistry; Rashid, Muhammed Zeeshan; Atay, İpek; Yağcı, Mustafa Barış; Yılgör, Emel; Kiraz, Alper; Yılgör, İskender; PhD Student; Post Doctorate Student; Researcher; Researcher; Faculty Member; Faculty Member; Department of Physics; Department of Chemistry; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; N/A; College of Sciences; College of Sciences; College of Sciences; College of Sciences; N/A; N/A; N/A; N/A; 40527; 22542; 24181Polymer surfaces reversibly switchable from superhydrophobic to superhydrophilic by exposure to oxygen plasma and subsequent thermal treatment are demonstrated. Two inherently different polymers, hydrophobic segmented polydimethylsiloxane-urea copolymer (TPSC) and hydrophilic poly(methyl methacrylate) (PMMA) are modified with fumed silica nanoparticles to prepare superhydrophobic surfaces with roughness on nanometer to micrometer scale. Smooth TPSC and PMMA surfaces are also used as control samples. Regardless of their chemical structure and surface topography, all surfaces display completely reversible wetting behavior changing from hydrophobic to hydrophilic and back for many cycles upon plasma oxidation followed by thermal annealing. Influence of plasma power, plasma exposure time, annealing temperature and annealing time on the wetting behavior of polymeric surfaces are investigated. Surface compositions, textures and topographies are characterized by X-ray photoelectron spectroscopy (XPS), scanning electron microscopy (SEM) and white light interferometry (WLI), before and after oxidation and thermal annealing. Wetting properties of the surfaces are determined by measuring their static, advancing and receding water contact angle. We conclude that the chemical structure and surface topography of the polymers play a relatively minor role in reversible wetting behavior, where the essential factors are surface oxidation and migration of polymer molecules to the surface upon thermal annealing. Reconfigurable water channels on polymer surfaces are produced by plasma treatment using a mask and thermal annealing cycles. Such patterned reconfigurable hydrophilic regions can find use in surface microfluidics and optofluidics applications. (C) 2018 Elsevier B.V. All rights reserved.Publication Metadata only The first alkaline-earth azidoaurate(III), Ba[Au(N-3)(4)](2) center dot 4 H2O(Wiley, 2023) Prots, Yurii; Jach, Franziska; Afyon, Semih; Höhn, Peter; Department of Chemistry; Department of Chemistry; Department of Chemistry; Subaşı, Yaprak; Tekin, Elif Sena; Somer, Mehmet Suat; Researcher; Undergraduate Student; Faculty Member; Department of Chemistry; College of Sciences; College of Sciences; College of Sciences; N/A; N/A; 178882Transparent, dark orange Ba[Au(N-3)(4)](2) center dot 4 H2O was synthesized by reaction of Ba(N-3)(2) and AuCl3 or HAuCl4 in aqueous solution. The novel barium tetraazidoaurate(III) tetrahydrate crystallizes in the monoclinic space group Cc (no. 9) with a=1813.68(17) pm, b=1737.95(11) pm, c=682.04(8) pm and beta=108.849(4)degrees. The predominant structural features of Ba[Au(N-3)(4)](2) center dot 4 H2O are two crystallographically independent discrete anions [Au(N-3)(4)](-) with gold in a tetragonal planar coordination by nitrogen. Vibrational spectra show good agreement with those of other azidoaurates(III). Upon drying, this salt was shown to be a highly explosive material.Publication Metadata only Mesoporous graphitic carbon nitride-supported binary MPt (M: Co, Ni, Cu) nanoalloys as electrocatalysts for borohydride oxidation and hydrogen evolution reaction(Elsevier, 2020) Oliveira, Raisa C. P.; Sevim, Melike; Sljukic, Biljana; Sequeira, Cesar A. C.; Santos, Diogo M. F.; Department of Chemistry; Metin, Önder; Faculty Member; Department of Chemistry; College of Sciences; 46962In this work, binary MPt (M = Co, Ni, Cu) nanoalloys and mesoporous carbon nitride (mpg-C3N4) as support material are prepared, and then gathered together by liquid phase self-assembly in order to produce MPt/mpg-C3N4 electrocatalysts. The yielded electrocatalysts are characterized by TEM, ICP-MS and XRD techniques in order to determine their morphology, composition and textural properties. Evaluation of MPt/mpg-C3N4 (<3 wt.% of Pt) electrocatalysts performance for hydrogen evolution reaction (HER) and borohydride oxidation reaction (BOR) is carried out. Pt/mpg-C3N4 is also studied to better understand the alloying effect on the electrocatalysts' performance, being concluded that it clearly increases the catalytic activity while decreasing the necessary Pt metal amount. For HER, CoPt/mpg-C3N4 was found to be the best catalyst, presenting a Tafel slope of 109 mV dec(-1) at 65 degrees C. Regarding BOR, CuPt/mpg-C3N4 demonstrated the best catalytic activity with average activation energy and reaction order with respect to BH4- of 29.4 kJ mol(-1) and 0.87, respectively.Publication Metadata only An experimental study on heat transfer performance of iron oxide based ferrofluids(ASME, 2012) Kaya, Alihan; Kurtoglu, Evrim; Kosar, Ali; Department of Chemistry; Acar, Havva Funda Yağcı; Faculty Member; Department of Chemistry; College of Sciences; 178902Nanofluids are colloidal compounds, where the solid phase material is composed of nano sized particles, and the liquid phase can potentially be any fluid but aqueous media are common. As a common nanofluid type, ferrofluids are formed by holding solid nanoparticles in suspension by weak intermolecular forces and may be produced from materials with different magnetic properties. Magnetite is one of the materials used for its natural ferromagnetic properties. Heat transfer performance of ferrofluids is one of the crucial properties among many others that should be analyzed and considered for their wide range of applications. For this purpose, experiments were conducted in order to characterize heat transfer properties of ironoxide based ferrofluids flowing through a microchannel. Promising results were obtained from this study, which are suggesting the use of ferrofluids for heat transfer applications can be advantageous.Publication Metadata only Structures and properties of NbOF3 and TaOF3 - with a remark to the O/F ordering in the SnF4 type structure(Wiley-V C H Verlag Gmbh, 2002) Köhler, J; Simon, A; van Wullen, L; Cordier, S; Roisnel, T; Poulain, M; Department of Chemistry; Somer, Mehmet Suat; Faculty Member; Department of Chemistry; College of Sciences; 178882Powder samples of NbOF3 und TaOF3 were prepared by heating mixtures of NbO2F and NbF5 or TaO2F and TaF5, respectively, in the corresponding stoichiometric ratio in platinum crucibles under argon atmosphere (180-220degreesC). Both oxide fluorides are coulourless with a slight greyish tinge. They are sensitive to moisture and decompose in air at room temperature within hours. Both, NbOF3 and TaOF3 crystallize as a variant of the SnF4 type structure, space group 14/mmm. The structures have been refined from X-ray powder diffraction data using the Rietveld method (a = 3.9675(1) Angstrom, c = 8.4033(1) Angstrom, R-B = 3.60%, R-p = 4.58% for NbOF3 and a = 3.9448(1) Angstrom, c = 8.4860(1) Angstrom, R-a = 2.07%, R-p = 2.44% for TaOF3). Characteristic building units are sheets of corner sharing MX6 octahedra which are stacked via van der Waals interactions to a three dimensional framework. The occupancy of the two crystallographic sites for the anions by O and F is discussed on the basis of structure refinements, bond order summations, IR and NMR data and calculations of the Madelung parts of the lattice energy.Publication Metadata only FT-Raman, FT-IR and NMR spectra, vibrational assignments and density functional studies of 1,3-bis(benzimidazol-2-yl)-2-thiapropane ligand and its Zn(II) halide complexes(2008) Aghatabay, Naz Mohammed; Tulu, Metin; Yılmaz, Ayberk; Department of Chemistry; Department of Chemistry; Somer, Mehmet Suat; Haciu, Durata; Faculty Member; Teaching Faculty; Department of Chemistry; College of Sciences; College of Sciences; 178882; N/A1,3-bis(benzimidazol-2-yl)-2-thiapropane (L) ligand and its zinc halide ZnX2 (X = Cl, Br, I) complexes have been synthesized. The compounds were characterized using the elemental analysis, molar conductivity, FT-Raman, FT-IR (mid i.r., far i.r.), 1H and 13C NMR spectra, and quantum chemical calculations performed with Gaussian 03 package program set. The optimized geometries and vibrational frequencies of the ligand and [Zn(L)Cl2] complex were calculated using the DFT/B3LYP method with a 6–31g(d) basis set. The geometry optimization of [Zn(L)Cl2] yields a slightly distorted tetrahedral environment around Zn ion, while the molecule clearly reveals the Cs symmetry. The molar conductivity data reveals that the complexes are neutral. The ligand is bidentate, via two of the imine nitrogen atoms in the bis-imidazole ring units, and together with the monodentate coordination of the two halides to the metal centre.Publication Metadata only Wetting behavior of superhydrophobic poly(methyl methacrylate)(Elsevier Science Sa, 2018) Department of Chemistry; N/A; Department of Chemistry; Yılgör, Emel; Söz, Çağla Koşak; Yılgör, İskender; Researcher; PhD Student; Faculty Member; Department of Chemistry; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); College of Sciences; Graduate School of Sciences and Engineering; College of Sciences; 40527; N/A; 24181Superhydrophobic PMMA surfaces were prepared by spin-coating and doctor blade coating of PMAA/hydrophobic silica (1/10 by weight) dispersions in toluene onto glass substrates. Influence of the number of coating layers applied and gauge thickness of the doctor blade used on surface properties were investigated. Formation of dual scale, micro/nano surface topographies were demonstrated by scanning electron microscopy, atomic force microscopy and white light interferometry studies. Roughness factor (r) and average surface roughness (R-a) values of the surfaces were determined. Wetting behavior of superhydrophobic PMMA surfaces obtained by introducing micro-nano, hierarchical roughness to inherently hydrophilic smooth PMMA films cannot be explained by Wenzel model. Therefore, wetting behavior of these surfaces were analyzed using Cassie-Baxter model and area fraction of surface protrusions were estimated.Publication Metadata only Transformation of reduced graphene aerogel-supported atomically dispersed iridium into stable clusters approximated as Ir-6 during ethylene hydrogenation catalysis(Elsevier, 2022) Zhao, Yuxin; Hoffman, Adam S.; Gates, Bruce C.; Bare, Simon R.; Department of Chemistry; Department of Chemical and Biological Engineering; N/A; N/A; N/A; Ünal, Uğur; Uzun, Alper; Öztulum, Samira Fatma Kurtoğlu; Yalçın, Kaan; Çağlayan, Hatice Pelin; Faculty Member; Faculty Member; PhD Student; Master Student; Master Student; Department of Chemistry; Department of Chemical and Biological Engineering; Koç University Tüpraş Energy Center (KUTEM) / Koç Üniversitesi Tüpraş Enerji Merkezi (KÜTEM); College of Sciences; College of Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; 42079; 59917; 384798; N/A; N/ATransformation of atomically dispersed reduced graphene aerogel (rGA)-supported complexes, Ir-I(C2H4)(2)(+), with an iridium loading of 9.9 wt%, to form low-nuclearity clusters was investigated during ethylene hydrogenation catalysis. Continuous-scan X-ray absorption spectra demonstrate the formation of clusters well approximated as Ir-4 during reaction at 100 degrees C in flowing equimolar ethylene and H-2. The Ir-4 clusters transformed into clusters well approximated as Ir 6 when the feed molar ratio was switched to H-2: C2H4 = 2 and remained stable in pure H-2 at 100 degrees C. Catalyst performance data show that hydrogenation activity increased with metal nuclearity in the order of atomically dispersed iridium/rGA << Ir-4/rGA < Ir-6/ rGA. Continuous scan X-ray absorption data, complemented with aberration-corrected scanning transmission electron microscopy images, demonstrate that the supported clusters approximated as Ir-6 are stable even in H-2 at atmospheric pressure and 100 degrees C. These supported iridium clusters are among the ones having the highest metal loadings reported for a supported metal cluster catalyst.Publication Metadata only Crystal structure of bis[µ2-(3-benzimidazol-2-yl)-2-ethanethiolato-N,S,S)- chloro-palladium(II)], [(C6H4N2HCCH2CH2S)PdCl]2 C2H5OH(Walter de Gruyter GmbH, 2005) Agh-Atabay, N.M.; Borrmann, H.; Department of Chemistry; Department of Chemistry; Somer, Mehmet Suat; Haciu, Durata; Faculty Member; Teaching Faculty; Department of Chemistry; College of Sciences; College of Sciences; 178882; N/AC20H24Cl2N4OPd2S2, triclinic, P1 (no. 2), a = 8,796(1) Å, b = 9.844(1) Å, c = 14.718(2) A, α = 94.330(6)°, β = 98.546(6)°,γ = 99.258(7)°, V= 1237.3 Å3, Z= 2, Rgt(F) = 0.068, wRref(F2)= 0.142, T= 295 K.