Researcher:
Metin, Cemre Uçaryılmaz

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Master Student

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Cemre Uçaryılmaz

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Metin

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Metin, Cemre Uçaryılmaz

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20222

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    PublicationOpen Access
    Comprehensive bioinformatic analysis reveals a cancer-associated fibroblast gene signature as a poor prognostic factor and potential therapeutic target in gastric cancer
    (BioMed Central, 2022) Metin, Cemre Uçaryılmaz; Özcan, Gülnihal; Faculty Member; Graduate School of Health Sciences; School of Medicine; N/A; 185014
    Background: gastric cancer is one of the deadliest cancers, currently available therapies have limited success. Cancer-associated fibroblasts (CAFs) are pivotal cells in the stroma of gastric tumors posing a great risk for progression and chemoresistance. The poor prognostic signature for CAFs is not clear in gastric cancer, and drugs that target CAFs are lacking in the clinic. In this study, we aim to identify a poor prognostic gene signature for CAFs, targeting which may increase the therapeutic success in gastric cancer. Methods: we analyzed four GEO datasets with a network-based approach and validated key CAF markers in The Cancer Genome Atlas (TCGA) and The Asian Cancer Research Group (ACRG) cohorts. We implemented stepwise multivariate Cox regression guided by a pan-cancer analysis in TCGA to identify a poor prognostic gene signature for CAF infiltration in gastric cancer. Lastly, we conducted a database search for drugs targeting the signature genes. Results: our study revealed the COL1A1, COL1A2, COL3A1, COL5A1, FN1, and SPARC as the key CAF markers in gastric cancer. Analysis of the TCGA and ACRG cohorts validated their upregulation and poor prognostic significance. The stepwise multivariate Cox regression elucidated COL1A1 and COL5A1, together with ITGA4, Emilin1, and TSPAN9 as poor prognostic signature genes for CAF infiltration. The search on drug databases revealed collagenase clostridium histolyticum, ocriplasmin, halofuginone, natalizumab, firategrast, and BIO-1211 as the potential drugs for further investigation. Conclusions: our study demonstrated the central role of extracellular matrix components secreted and remodeled by CAFs in gastric cancer. The gene signature we identified in this study carries high potential as a predictive tool for poor prognosis in gastric cancer patients. Elucidating the mechanisms by which the signature genes contribute to poor patient outcomes can lead to the discovery of more potent molecular-targeted agents and increase the therapeutic success in gastric cancer.
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    PublicationOpen Access
    The HIF-1 alpha as a potent inducer of the hallmarks in gastric cancer
    (Multidisciplinary Digital Publishing Institute (MDPI), 2022) Metin, Cemre Uçaryılmaz; Özcan, Gülnihal; Faculty Member; Graduate School of Health Sciences; School of Medicine; N/A; 185014
    Hypoxia is the principal architect of the topographic heterogeneity in tumors. Hypoxiainducible factor-1 alpha (HIF-1 alpha) reinforces all hallmarks of cancer and donates cancer cells with more aggressive characteristics at hypoxic niches. HIF-1 alpha potently induces sustained growth factor signaling, angiogenesis, epithelial-mesenchymal transition, and replicative immortality. Hypoxia leads to the selection of cancer cells that evade growth suppressors or apoptotic triggers and deregulates cellular energetics. HIF-1 alpha is also associated with genetic instability, tumor-promoting inflammation, and escape from immunity. Therefore, HIF-1 alpha may be an important therapeutic target in cancer. Despite that, the drug market lacks safe and efficacious anti-HIF-1 alpha molecules, raising the quest for fully unveiling the complex interactome of HIF-1 alpha in cancer to discover more effective strategies. The knowledge gap is even wider in gastric cancer, where the number of studies on hypoxia is relatively low compared to other well-dissected cancers. A comprehensive review of the molecular mechanisms by which HIF-1 alpha induces gastric cancer hallmarks could provide a broad perspective to the investigators and reveal missing links to explore in future studies. Thus, here we review the impact of HIF-1 alpha on the cancer hallmarks with a specific focus on gastric cancer.