Publication:
Asymmetry in mechanosensitive gene expression during aortic arch morphogenesis

dc.contributor.coauthorKowalski, William J.
dc.contributor.coauthorKeller, Bradley B.
dc.contributor.departmentDepartment of Mechanical Engineering
dc.contributor.kuauthorPekkan, Kerem
dc.contributor.kuauthorKarakaya, Cansu
dc.contributor.kuauthorGöktaş, Selda
dc.contributor.kuauthorÇelik, Merve
dc.contributor.kuprofileFaculty Member
dc.contributor.kuprofileMaster Student
dc.contributor.kuprofileResearcher
dc.contributor.kuprofileUndergraduate Student
dc.contributor.otherDepartment of Mechanical Engineering
dc.contributor.schoolcollegeinstituteGraduate School of Sciences and Engineering
dc.contributor.yokid161845
dc.contributor.yokidN/A
dc.contributor.yokidN/A
dc.contributor.yokidN/A
dc.date.accessioned2024-11-09T12:40:48Z
dc.date.issued2018
dc.description.abstractEmbryonic aortic arches (AA) are initially bilaterally paired, transitional vessels and failures in remodeling based on hemodynamic and growth-related adaptations cause a spectrum of congenital heart disease (CHD) anatomies. Identifying regulatory mechanisms and cross-talk between the genetic elements of these vessels are critical to understand the ethiology of CHD and refine predictive computational models. This study aims to screen expression profiles of fundamental biological pathways in AA at early stages of chick embryo morphogenesis and correlate them with our current understanding of growth and mechanical loading. Reverse transcription-quantitative PCR (RT-qPCR) was followed by correlation and novel peak expression analyses to compare the behaviour and activation period of the genes. Available protein networks were also integrated to investigate the interactions between molecules and highlight major hierarchies. Only wall shear stress (WSS) and growth-correlated expression patterns were investigated. Effect of WSS was seen directly on angiogenesis as well on structural and apoptosis-related genes. Our time-resolved network suggested that WSS-correlated genes coordinate the activity of critical growth factors. Moreover, differential gene expression of left and right AA might be an indicator of subsequent asymmetric morphogenesis. These findings may further our understanding of the complex processes of cardiac morphogenesis and errors resulting in CHD.
dc.description.fulltextYES
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.openaccessYES
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuEU
dc.description.sponsorshipEuropean Research Council (ERC) Starting Grant - Vascular Growth project
dc.description.sponsorshipEuropean Molecular Biology Organization (EMBO)
dc.description.sponsorshipEuropean Union (European Union)
dc.description.sponsorshipHorizon 2020
dc.description.sponsorshipEuropean Research Council (ERC)
dc.description.versionPublisher version
dc.description.volume8
dc.formatpdf
dc.identifier.doi10.1038/s41598-018-35127-7
dc.identifier.eissn2045-2322
dc.identifier.embargoNO
dc.identifier.filenameinventorynoIR00530
dc.identifier.issn2045-2322
dc.identifier.linkhttps://doi.org/10.1038/s41598-018-35127-7
dc.identifier.quartileQ2
dc.identifier.scopus2-s2.0-85056603849
dc.identifier.urihttps://hdl.handle.net/20.500.14288/2213
dc.identifier.wos450280500008
dc.keywordsFluid shear-stress
dc.keywordsDeveloping cardiovascular-system
dc.keywordsPharyngeal arch
dc.keywordsNeural-crest
dc.keywordsEndothelial-cells
dc.keywordsMessenger-RNA
dc.keywordsVe-cadherin
dc.keywordsTBX1
dc.keywordsJunctions
dc.keywordsFGF8
dc.languageEnglish
dc.publisherNature Publishing Group (NPG)
dc.relation.grantno307460
dc.relation.urihttp://cdm21054.contentdm.oclc.org/cdm/ref/collection/IR/id/8137
dc.sourceScientific Reports
dc.subjectScience and technology
dc.titleAsymmetry in mechanosensitive gene expression during aortic arch morphogenesis
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.authorid0000-0001-7637-4445
local.contributor.authoridN/A
local.contributor.authoridN/A
local.contributor.authoridN/A
local.contributor.kuauthorPekkan, Kerem
local.contributor.kuauthorKarakaya, Cansu
local.contributor.kuauthorGöktaş, Selda
local.contributor.kuauthorÇelik, Merve
relation.isOrgUnitOfPublicationba2836f3-206d-4724-918c-f598f0086a36
relation.isOrgUnitOfPublication.latestForDiscoveryba2836f3-206d-4724-918c-f598f0086a36

Files

Original bundle

Now showing 1 - 1 of 1
Thumbnail Image
Name:
8137.pdf
Size:
2.16 MB
Format:
Adobe Portable Document Format