Publication:
Unified modeling of familial mediterranean fever and cryopyrin associated periodic syndromes

dc.contributor.coauthorGul, Ahmet
dc.contributor.departmentDepartment of Electrical and Electronics Engineering
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.kuauthorBozkurt, Yasemin
dc.contributor.kuauthorDemir, Alper
dc.contributor.kuauthorErman, Burak
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.date.accessioned2024-11-09T13:07:34Z
dc.date.issued2015
dc.description.abstractFamilial mediterranean fever (FMF) and Cryopyrin associated periodic syndromes (CAPS) are two prototypical hereditary autoinflammatory diseases, characterized by recurrent episodes of fever and inflammation as a result of mutations in MEFV and NLRP3 genes encoding Pyrin and Cryopyrin proteins, respectively. Pyrin and Cryopyrin play key roles in the multiprotein inflammasome complex assembly, which regulates activity of an enzyme, Caspase 1, and its target cytokine, IL-1 beta. Overproduction of IL-1 beta by Caspase 1 is the main cause of episodic fever and inflammatory findings in FMF and CAPS. We present a unifying dynamical model for FMF and CAPS in the form of coupled nonlinear ordinary differential equations. The model is composed of two subsystems, which capture the interactions and dynamics of the key molecular players and the insults on the immune system. One of the subsystems, which contains a coupled positive-negative feedback motif, captures the dynamics of inflammation formation and regulation. We perform a comprehensive bifurcation analysis of the model and show that it exhibits three modes, capturing the Healthy, FMF, and CAPS cases. The mutations in Pyrin and Cryopyrin are reflected in the values of three parameters in the model. We present extensive simulation results for the model that match clinical observations.
dc.description.fulltextYES
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.openaccessYES
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuN/A
dc.description.sponsorshipKoƧ University Graduate Fellowship
dc.description.versionPublisher version
dc.description.volume2015
dc.identifier.doi10.1186/1546-0096-13-S1-O43
dc.identifier.eissn1546-0096
dc.identifier.embargoNO
dc.identifier.filenameinventorynoIR00283
dc.identifier.issn1546-0096
dc.identifier.quartileN/A
dc.identifier.scopus2-s2.0-84956832787
dc.identifier.urihttps://hdl.handle.net/20.500.14288/2610
dc.identifier.wos356728900001
dc.keywordsIl-1 Receptor
dc.keywordsInflammasome activation
dc.keywordsGene
dc.keywordsInterleukin-1
dc.keywordsPyrin
dc.keywordsProtein
dc.keywordsDomain
dc.keywordsInhibition
dc.keywordsAntagonist
dc.keywordsCaspase-1
dc.language.isoeng
dc.publisherBioMed Central
dc.relation.ispartofPediatric Rheumatology Online Journal
dc.relation.urihttp://cdm21054.contentdm.oclc.org/cdm/ref/collection/IR/id/1309
dc.subjectMathematical and computational biology
dc.titleUnified modeling of familial mediterranean fever and cryopyrin associated periodic syndromes
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.kuauthorBozkurt, Yasemin
local.contributor.kuauthorDemir, Alper
local.contributor.kuauthorErman, Burak
local.publication.orgunit1GRADUATE SCHOOL OF SCIENCES AND ENGINEERING
local.publication.orgunit1College of Engineering
local.publication.orgunit2Department of Electrical and Electronics Engineering
local.publication.orgunit2Department of Chemical and Biological Engineering
local.publication.orgunit2Graduate School of Sciences and Engineering
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