Publication:
Closed-form representations of field components of fluorescent emitters in layered media

dc.contributor.coauthorDoğan, Mehmet
dc.contributor.coauthorSwan, Anna K.
dc.contributor.coauthorGoldberg, Bennett B.
dc.contributor.coauthorÜnlü, M. Selim
dc.contributor.departmentDepartment of Electrical and Electronics Engineering
dc.contributor.kuauthorAksun, M. İrşadi
dc.contributor.kuprofileFaculty Member
dc.contributor.otherDepartment of Electrical and Electronics Engineering
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.yokid28358
dc.date.accessioned2024-11-10T00:07:50Z
dc.date.issued2009
dc.description.abstractDipole radiation in and near planar stratified dielectric media is studied theoretically within the context of fluorescence microscopy, as fluorescent emitters are generally modeled by electric dipoles. Although the main emphasis of this study is placed on the closed-form representations of the field components of fluorescent emitters in layered environments in near- and far-field regions, the underlying motive is to understand the limits of spectral self-interference fluorescence microscopy in studying the dipole orientation of fluorophores. Since accurate calculations of the field components of arbitrarily polarized electric dipoles in layered environments are computationally very time-consuming, a method for finding their closed-form representations is proposed using the closed-form potential Green's functions previously developed for microwave applications. The method is verified on typical geometries used in spectral self-interference microscopy experiments, where a dipole emitter is positioned over a slab of SiO2 on top of a Si substrate. In addition to facilitating efficient calculation of near and intermediate fields of fluorescent emitters, closed-form Green's functions for fields would also play a crucial role in developing efficient and rigorous computational analysis and design tools for optical passive devices such as optical antennas by significantly improving the computational cost of the numerical solution of the integral equation.
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.issue6
dc.description.openaccessNO
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuN/A
dc.description.sponsorshipU.S. National Science Foundation (NSF) [DBI 0138425, EEC-9987821]
dc.description.sponsorshipU.S. Air Force Office of Scientific Research (AFOSR) [MURI F-49620-03-1-0379]
dc.description.sponsorshipNational Institutes of Health (NIH), National Institute of Biomedical Imaging and Bio Engineering [5801 EB00 756-03]
dc.description.sponsorshipThe Scientific and Technological Research Council of Turkey (TUBITAK) [106E068] This work was supported in part by the U.S. National Science Foundation (NSF) under grant DBI 0138425 and award EEC-9987821 of the Engineering Research Centers Program
dc.description.sponsorshipin part by the U.S. Air Force Office of Scientific Research (AFOSR) under grant MURI F-49620-03-1-0379
dc.description.sponsorshipin part by the National Institutes of Health (NIH), National Institute of Biomedical Imaging and Bio Engineering, under grant 5801 EB00 756-03
dc.description.sponsorshipand in part by The Scientific and Technological Research Council of Turkey (TUBITAK) under grant 106E068.
dc.description.volume26
dc.identifier.doi10.1364/JOSAA.26.001458
dc.identifier.eissn1520-8532
dc.identifier.issn1084-7529
dc.identifier.quartileQ3
dc.identifier.scopus2-s2.0-67650711472
dc.identifier.urihttp://dx.doi.org/10.1364/JOSAA.26.001458
dc.identifier.urihttps://hdl.handle.net/20.500.14288/16854
dc.identifier.wos267499600016
dc.keywordsInterference-contrast microscopy
dc.keywordsPlane dielectric interface
dc.keywordsLight-emission
dc.keywordsRadiation-patterns
dc.keywordsSingle molecules
dc.keywordsGreens-functions
dc.keywordsCell-adhesion
dc.keywordsDipoles
dc.languageEnglish
dc.publisherOptical Soc Amer
dc.sourceJournal of The Optical Society of America A-Optics Image Science and Vision
dc.subjectOptics
dc.titleClosed-form representations of field components of fluorescent emitters in layered media
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.authorid0000-0003-0338-3476
local.contributor.kuauthorAksun, M. İrşadi
relation.isOrgUnitOfPublication21598063-a7c5-420d-91ba-0cc9b2db0ea0
relation.isOrgUnitOfPublication.latestForDiscovery21598063-a7c5-420d-91ba-0cc9b2db0ea0

Files