Publication:
Oxidative stress-driven transcriptomic remodeling in human astrocytes reveals network signatures associated with neurodegenerative and cardiovascular processes

dc.contributor.coauthorBota, Patricia M.
dc.contributor.coauthorPicon-Pages, Pol
dc.contributor.coauthorFanlo-Ucar, Hugo
dc.contributor.coauthorAlmabhouh, Saja
dc.contributor.coauthorBagudanch, Oriol
dc.contributor.coauthorGohl, Patrick
dc.contributor.coauthorMolina-Fernandez, Ruben
dc.contributor.coauthorFernandez-Fuentes, Narcis
dc.contributor.coauthorBarbu, Eduard
dc.contributor.coauthorVicente, Raul
dc.contributor.coauthorNattel, Stanley
dc.contributor.coauthorOis, Angel
dc.contributor.coauthorPuig-Pijoan, Albert
dc.contributor.coauthorGarcia-Ojalvo, Jordi
dc.contributor.coauthorMunoz, Francisco J.
dc.contributor.coauthorOliva, Baldomero
dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.departmentDepartment of Computer Engineering
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.kuauthorZeylan, Melisa Ece
dc.contributor.kuauthorŞenyüz, Simge
dc.contributor.kuauthorKeskin, Özlem
dc.contributor.kuauthorGürsoy, Attila
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.date.accessioned2026-02-26T07:12:35Z
dc.date.available2026-02-25
dc.date.issued2026
dc.description.abstractAstrocytes are central to brain homeostasis, supporting neuronal metabolism, synaptic activity, and the blood-brain barrier. With aging, these glial cells undergo molecular and functional changes that weaken support functions and promote neuroinflammation, contributing to neurodegeneration. Yet the systems-level mechanisms by which astrocytes respond to aging-related stressors remain poorly defined in human models. Because aging also heightens risk for cardiovascular disease, cognitive impairment, type 2 diabetes, and systemic inflammation, clarifying shared astrocytic pathways is critical for understanding brain-body crosstalk. Using an in vitro human astrocyte model exposed to sublethal oxidative stress (10 mu M H2O2) as a proxy for age-related cellular stress, we profiled transcriptomic changes and identified differentially expressed genes across antioxidant defenses, proteostasis, transcriptional regulation, vesicular trafficking, and inflammatory signaling. We then performed network-prioritization analyses on a curated human protein-protein interactome: one seeded with the astrocyte oxidative stress responsive genes and six with phenotype-associated gene sets (Alzheimer's disease, cardiovascular disease, cognitive impairment, type 2 diabetes, oxidative stress, and inflammation). Intersecting the top 5 % scoring genes from each run yielded a 127-gene core shared across all seven, enriched for proteostasis, DNA repair, mitochondrial regulation, and telomere and nuclear envelope maintenance. Structure-guided analyses highlighted vulnerable interfaces, including lamin A/C-lamin B1, alpha-actinin-filamins, 14-3-3 dimers, and aminoacyl-tRNA synthetase assemblies, where pathogenic variants are predicted to destabilize or aberrantly stabilize protein interactions. Structure-based interface predictions also highlight potential interactions between amyloid precursor protein (APP) and valosin-containing protein (VCP), and between p53 and 14-3-3 zeta, poten-tially linking proteostasis and stress signaling. Together, these analyses identify a conserved astrocyte-centered network signature that may relate neurodegenerative and cardiovascular processes, and prioritize structurally testable candidates for biomarker and intervention hypothesis testing.
dc.description.fulltextYes
dc.description.harvestedfromManual
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.openaccessGold OA
dc.description.openaccessGreen OA
dc.description.peerreviewstatusN/A
dc.description.publisherscopeInternational
dc.description.readpublishN/A
dc.description.sponsoredbyTubitakEuTÜBİTAK
dc.description.sponsorshipThis work was funded by the Spanish Institute of Health Carlos III by project reference AC20/00009 -FEDER/UE and ERANET ERA-CVD_JTC2020-015. This work was also supported by the Spanish Min-istry of Science and Innovation and Agencia Estatal de Investigacion plus FEDER Funds through grants PID2023-150068OB-I00 funded by MICIU/AEI/10.13039/501100011033 and by 'ERDF A way of making Europe' (BO) and PID2023-149767OB-I00 funded by MICIU/AEI/10.13039/501100011033 and by 'ERDF A way of making Europe' (FJM) , and, 'Unidad de Excelencia Maria de Maeztu' CEX2024-001431-M, funded by MICIU/AEI/10.13039/501100011033. This project was funded in part by TUBITAK Research GrantNo: 220N252 (AG) . S. A. acknowledges the support provided by Erasmus + for the study program. The authors thank the Scientific Computing Core Facility (MELIS-UPF) .
dc.description.versionN/A
dc.identifier.doi10.1016/j.csbj.2025.12.032
dc.identifier.embargoNo
dc.identifier.endpage275
dc.identifier.grantno220N252
dc.identifier.issn2001-0370
dc.identifier.pubmed41550140
dc.identifier.quartileQ2
dc.identifier.scopus2-s2.0-105027172814
dc.identifier.startpage263
dc.identifier.urihttps://doi.org/10.1016/j.csbj.2025.12.032
dc.identifier.urihttps://hdl.handle.net/20.500.14288/32465
dc.identifier.volume31
dc.identifier.wos001663378200001
dc.keywordsAging-associated proteomic remodeling
dc.keywordsOxidative stress-responsive astrocyte pathways
dc.keywordsAstrocytic vulnerability networks
dc.keywordsProteostasis and mitochondrial dysfunction
dc.keywordsTelomere and nuclear envelope integrity
dc.keywordsStructurally vulnerable protein–protein interfaces
dc.keywordsNeurodegeneration–cardiovascular disease crosstalk
dc.keywordsNetwork-based gene–disease prioritization
dc.keywordsStructure-guided variant impact prediction
dc.language.isoeng
dc.publisherElsevier
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofComputational and Structural Biotechnology Journal
dc.relation.openaccessYes
dc.rightsCC BY-NC-ND (Attribution-NonCommercial-NoDerivs)
dc.rights.uriAttribution, Non-commercial, No Derivative Works (CC-BY-NC-ND)
dc.subjectBiochemistry
dc.subjectMolecular biology
dc.subjectBiotechnology
dc.subjectApplied microbiology
dc.titleOxidative stress-driven transcriptomic remodeling in human astrocytes reveals network signatures associated with neurodegenerative and cardiovascular processes
dc.typeJournal Article
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