Publication: Oxidative stress-driven transcriptomic remodeling in human astrocytes reveals network signatures associated with neurodegenerative and cardiovascular processes
| dc.contributor.coauthor | Bota, Patricia M. | |
| dc.contributor.coauthor | Picon-Pages, Pol | |
| dc.contributor.coauthor | Fanlo-Ucar, Hugo | |
| dc.contributor.coauthor | Almabhouh, Saja | |
| dc.contributor.coauthor | Bagudanch, Oriol | |
| dc.contributor.coauthor | Gohl, Patrick | |
| dc.contributor.coauthor | Molina-Fernandez, Ruben | |
| dc.contributor.coauthor | Fernandez-Fuentes, Narcis | |
| dc.contributor.coauthor | Barbu, Eduard | |
| dc.contributor.coauthor | Vicente, Raul | |
| dc.contributor.coauthor | Nattel, Stanley | |
| dc.contributor.coauthor | Ois, Angel | |
| dc.contributor.coauthor | Puig-Pijoan, Albert | |
| dc.contributor.coauthor | Garcia-Ojalvo, Jordi | |
| dc.contributor.coauthor | Munoz, Francisco J. | |
| dc.contributor.coauthor | Oliva, Baldomero | |
| dc.contributor.department | Graduate School of Sciences and Engineering | |
| dc.contributor.department | Department of Computer Engineering | |
| dc.contributor.department | Department of Chemical and Biological Engineering | |
| dc.contributor.kuauthor | Zeylan, Melisa Ece | |
| dc.contributor.kuauthor | Şenyüz, Simge | |
| dc.contributor.kuauthor | Keskin, Özlem | |
| dc.contributor.kuauthor | Gürsoy, Attila | |
| dc.contributor.schoolcollegeinstitute | GRADUATE SCHOOL OF SCIENCES AND ENGINEERING | |
| dc.contributor.schoolcollegeinstitute | College of Engineering | |
| dc.date.accessioned | 2026-02-26T07:12:35Z | |
| dc.date.available | 2026-02-25 | |
| dc.date.issued | 2026 | |
| dc.description.abstract | Astrocytes are central to brain homeostasis, supporting neuronal metabolism, synaptic activity, and the blood-brain barrier. With aging, these glial cells undergo molecular and functional changes that weaken support functions and promote neuroinflammation, contributing to neurodegeneration. Yet the systems-level mechanisms by which astrocytes respond to aging-related stressors remain poorly defined in human models. Because aging also heightens risk for cardiovascular disease, cognitive impairment, type 2 diabetes, and systemic inflammation, clarifying shared astrocytic pathways is critical for understanding brain-body crosstalk. Using an in vitro human astrocyte model exposed to sublethal oxidative stress (10 mu M H2O2) as a proxy for age-related cellular stress, we profiled transcriptomic changes and identified differentially expressed genes across antioxidant defenses, proteostasis, transcriptional regulation, vesicular trafficking, and inflammatory signaling. We then performed network-prioritization analyses on a curated human protein-protein interactome: one seeded with the astrocyte oxidative stress responsive genes and six with phenotype-associated gene sets (Alzheimer's disease, cardiovascular disease, cognitive impairment, type 2 diabetes, oxidative stress, and inflammation). Intersecting the top 5 % scoring genes from each run yielded a 127-gene core shared across all seven, enriched for proteostasis, DNA repair, mitochondrial regulation, and telomere and nuclear envelope maintenance. Structure-guided analyses highlighted vulnerable interfaces, including lamin A/C-lamin B1, alpha-actinin-filamins, 14-3-3 dimers, and aminoacyl-tRNA synthetase assemblies, where pathogenic variants are predicted to destabilize or aberrantly stabilize protein interactions. Structure-based interface predictions also highlight potential interactions between amyloid precursor protein (APP) and valosin-containing protein (VCP), and between p53 and 14-3-3 zeta, poten-tially linking proteostasis and stress signaling. Together, these analyses identify a conserved astrocyte-centered network signature that may relate neurodegenerative and cardiovascular processes, and prioritize structurally testable candidates for biomarker and intervention hypothesis testing. | |
| dc.description.fulltext | Yes | |
| dc.description.harvestedfrom | Manual | |
| dc.description.indexedby | WOS | |
| dc.description.indexedby | Scopus | |
| dc.description.indexedby | PubMed | |
| dc.description.openaccess | Gold OA | |
| dc.description.openaccess | Green OA | |
| dc.description.peerreviewstatus | N/A | |
| dc.description.publisherscope | International | |
| dc.description.readpublish | N/A | |
| dc.description.sponsoredbyTubitakEu | TÜBİTAK | |
| dc.description.sponsorship | This work was funded by the Spanish Institute of Health Carlos III by project reference AC20/00009 -FEDER/UE and ERANET ERA-CVD_JTC2020-015. This work was also supported by the Spanish Min-istry of Science and Innovation and Agencia Estatal de Investigacion plus FEDER Funds through grants PID2023-150068OB-I00 funded by MICIU/AEI/10.13039/501100011033 and by 'ERDF A way of making Europe' (BO) and PID2023-149767OB-I00 funded by MICIU/AEI/10.13039/501100011033 and by 'ERDF A way of making Europe' (FJM) , and, 'Unidad de Excelencia Maria de Maeztu' CEX2024-001431-M, funded by MICIU/AEI/10.13039/501100011033. This project was funded in part by TUBITAK Research GrantNo: 220N252 (AG) . S. A. acknowledges the support provided by Erasmus + for the study program. The authors thank the Scientific Computing Core Facility (MELIS-UPF) . | |
| dc.description.version | N/A | |
| dc.identifier.doi | 10.1016/j.csbj.2025.12.032 | |
| dc.identifier.embargo | No | |
| dc.identifier.endpage | 275 | |
| dc.identifier.grantno | 220N252 | |
| dc.identifier.issn | 2001-0370 | |
| dc.identifier.pubmed | 41550140 | |
| dc.identifier.quartile | Q2 | |
| dc.identifier.scopus | 2-s2.0-105027172814 | |
| dc.identifier.startpage | 263 | |
| dc.identifier.uri | https://doi.org/10.1016/j.csbj.2025.12.032 | |
| dc.identifier.uri | https://hdl.handle.net/20.500.14288/32465 | |
| dc.identifier.volume | 31 | |
| dc.identifier.wos | 001663378200001 | |
| dc.keywords | Aging-associated proteomic remodeling | |
| dc.keywords | Oxidative stress-responsive astrocyte pathways | |
| dc.keywords | Astrocytic vulnerability networks | |
| dc.keywords | Proteostasis and mitochondrial dysfunction | |
| dc.keywords | Telomere and nuclear envelope integrity | |
| dc.keywords | Structurally vulnerable protein–protein interfaces | |
| dc.keywords | Neurodegeneration–cardiovascular disease crosstalk | |
| dc.keywords | Network-based gene–disease prioritization | |
| dc.keywords | Structure-guided variant impact prediction | |
| dc.language.iso | eng | |
| dc.publisher | Elsevier | |
| dc.relation.affiliation | Koç University | |
| dc.relation.collection | Koç University Institutional Repository | |
| dc.relation.ispartof | Computational and Structural Biotechnology Journal | |
| dc.relation.openaccess | Yes | |
| dc.rights | CC BY-NC-ND (Attribution-NonCommercial-NoDerivs) | |
| dc.rights.uri | Attribution, Non-commercial, No Derivative Works (CC-BY-NC-ND) | |
| dc.subject | Biochemistry | |
| dc.subject | Molecular biology | |
| dc.subject | Biotechnology | |
| dc.subject | Applied microbiology | |
| dc.title | Oxidative stress-driven transcriptomic remodeling in human astrocytes reveals network signatures associated with neurodegenerative and cardiovascular processes | |
| dc.type | Journal Article | |
| dspace.entity.type | Publication | |
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