Publication:
Determination of terminal glycan and total monosaccharide profiles of reelin glycoprotein in SH-SY5Y neuroblastoma cell line by lectin blotting and capillary liquid chromatography electrospray ionization-ion trap tandem mass spectrometry system

dc.contributor.coauthorSahar, Umut
dc.contributor.coauthorDeveci, Remziye
dc.contributor.departmentN/A
dc.contributor.kuauthorDemir, Ramiz
dc.contributor.kuprofilePhD Student
dc.contributor.schoolcollegeinstituteGraduate School of Health Sciences
dc.contributor.yokidN/A
dc.date.accessioned2024-11-09T23:00:38Z
dc.date.issued2021
dc.description.abstractReelin (400 kDa) is an extracellular matrix glycoprotein that is a key regulator of the many significant biological processes including the brain formation, cell aggregation, and dendrite formation. The glycosylation contributes to the nature of the protein through folding, localization and trafficking, solubility, antigenicity, biological activity, and half-life. Although reelin is to be known as a glycoprotein, the knowledge of its glycosylation is very limited. In this study, we aimed to characterize the terminal glycan profile of reelin by lectin blotting and monosaccharide analysis of glycan chains by capillary liquid chromatography electrospray ionization ion trap tandem mass spectrometry (CapLC-ESI-MS/MS) in SH-SY5Y neuroblastoma cell line. According to our results, reelin was detected in different protein fragments (310, 250, and 85 kDa) in addition to full-length form (400 kDa) in the cell line. The reelin glycoprotein was found to carry the p-N-Acetylglucosamine, a-Mannose, 13-Galactose, and a-2,3 and a2,6 linked sialic acids by lectin blotting. Nevertheless, these terminal monosaccharides were found in different intensity according to reelin fragments. Besides, we purified a reelin fragment (250 kDa), and we analyzed it for their monosaccharide by CapLC-ESI-MS/MS. We found that reelin contained five types of monosaccharides, which were consisted of N-Acetylgalactosamine, N-Acetylglucosamine, Galactose, Glucose, Mannose and Sialic acid, from high to low abundance respectively. The present results provide a valuable guide for biochemical, genetic, and glycobiology based further experiments about reelin glycosylation in cancer perspective.
dc.description.indexedbyWoS
dc.description.issue2
dc.description.openaccessNO
dc.description.publisherscopeInternational
dc.description.sponsorshipEge University Scientific Research Projects Coordination Unit [18-FEN-019] This work was supported by the Ege University Scientific Research Projects Coordination Unit [grant numbers 18-FEN-019].
dc.description.volume1869
dc.identifier.doi10.1016/j.bbapap.2020.140559
dc.identifier.eissn1878-1454
dc.identifier.issn1570-9639
dc.identifier.urihttp://dx.doi.org/10.1016/j.bbapap.2020.140559
dc.identifier.urihttps://hdl.handle.net/20.500.14288/8087
dc.identifier.wos603450900002
dc.keywordsGlycosylation
dc.keywordsLC-MS
dc.keywordsLectin blot
dc.keywordsMonosaccharide
dc.keywordsReelin
dc.keywordsSH-SY5Y control neuronal migration
dc.keywordsSialic acids
dc.keywordsParacentrotus-lividus
dc.keywordsProtein glycosylation
dc.keywordsNervous-system
dc.keywordsVLDL receptor
dc.keywordsSea-urchin
dc.keywordsRecognition
dc.keywordsDisabled-1
dc.keywordsExpression
dc.languageEnglish
dc.publisherElsevier
dc.sourceBiochimica Et Biophysica Acta-Proteins and Proteomics
dc.subjectBiochemistry
dc.subjectMolecular biology
dc.subjectBiophysics
dc.titleDetermination of terminal glycan and total monosaccharide profiles of reelin glycoprotein in SH-SY5Y neuroblastoma cell line by lectin blotting and capillary liquid chromatography electrospray ionization-ion trap tandem mass spectrometry system
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.authorid0000-0001-6435-7883
local.contributor.kuauthorDemir, Ramiz

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