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Scaffold hopping and structural modification of NSC 663284: discovery of potent (non)halogenated aminobenzoquinones

dc.contributor.coauthorBayrak, Nilüfer
dc.contributor.coauthorSever, Belgin
dc.contributor.coauthorOtsuka, Masami
dc.contributor.coauthorFujita, Mikako
dc.contributor.coauthorTuyun, Amac Fatih
dc.contributor.departmentDepartment of Molecular Biology and Genetics
dc.contributor.departmentDepartment of Molecular Biology and Genetics
dc.contributor.kuauthorÇiftçi, Halil İbrahim
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.date.accessioned2024-12-29T09:36:38Z
dc.date.issued2024
dc.description.abstractThe development of new anticancer drugs is still ongoing as a solution to the unsatisfactory results obtained by chemotherapy patients. Our previous studies on natural product-based anticancer agents led us to synthesize a new series of Plastoquinone (PQ) analogs and study their anticancer effects. Four members of PQ analogs (PQ1-4) were designed based on the scaffold hopping strategy; the design was later completed with structural modification. The obtained PQ analogs were synthesized and biologically evaluated against different cancer genotypes according to NCI-60 screening in vitro. According to the NCI results, bromo and iodo-substituted PQ analogs (PQ2 and PQ3) showed remarkable anticancer activities with a wide-spectrum profile. Among the two selected analogs (PQ2 and PQ3), PQ2 showed promising anticancer activity, in particular against leukemia cell lines, at both single- and five-dose NCI screenings. This compound was also detected by MTT assay to reveal significant selectivity between Jurkat cells and PBMC (healthy) compared to imatinib. Further in silico studies indicated that PQ2 was able to occupy the ATP-binding cleft of Abl TK, one of the main targets of leukemia, through key interactions similar to dasatinib and imatinib. PQ2 is also bound to the minor groove of the double helix of DNA. Based on computational pharmacokinetic studies, PQ2 possessed a remarkable drug-like profile, making it a potential anti-leukemia drug candidate for future studies.
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.issue1
dc.description.openaccessGreen Published, gold
dc.description.publisherscopeInternational
dc.description.sponsorsThe authors present their thanks to the National Cancer Institute (NCI), Bethesda, Maryland, USA, for carrying out the antiproliferative activity by the Developmental Therapeutics Program (DTP), Division of Cancer Treatment and Diagnosis, National Cancer Institute (http://dtp.cancer.gov (accessed on 11 May 2022)). The authors thank the Central Laboratory of the Middle-East Technical University for High-Resolution Mass Spectroscopy (HRMS) measurements for mass analyses.
dc.description.volume12
dc.identifier.doi10.3390/biomedicines12010050
dc.identifier.eissn2227-9059
dc.identifier.quartileQ1
dc.identifier.scopus2-s2.0-85183387754
dc.identifier.urihttps://doi.org/10.3390/biomedicines12010050
dc.identifier.urihttps://hdl.handle.net/20.500.14288/22096
dc.identifier.wos1149136000001
dc.keywordsScaffold hopping
dc.keywordsAnticancer activity
dc.keywordsNSC 663284
dc.keywordsQuinones
dc.keywordsLeukemia
dc.keywordsAbl TK
dc.keywordsDNA
dc.keywordsADME
dc.keywordsMolecular docking
dc.languageen
dc.publisherMDPI
dc.relation.grantnoScientific Research Projects Coordination Unit of Istanbul University
dc.relation.grantnoNational Cancer Institute (NCI), Bethesda, Maryland, USA
dc.relation.grantnoDevelopmental Therapeutics Program (DTP), Division of Cancer Treatment and Diagnosis, National Cancer Institute
dc.relation.grantnoCentral Laboratory of the Middle-East Technical University
dc.sourceBiomedicines
dc.subjectBiochemistry and molecular biology
dc.subjectMedicine, research and experimental
dc.subjectPharmacology and pharmacy
dc.titleScaffold hopping and structural modification of NSC 663284: discovery of potent (non)halogenated aminobenzoquinones
dc.typeJournal article
dspace.entity.typePublication
local.contributor.kuauthorÇiftçi, Halil İbrahim
relation.isOrgUnitOfPublicationaee2d329-aabe-4b58-ba67-09dbf8575547
relation.isOrgUnitOfPublication.latestForDiscoveryaee2d329-aabe-4b58-ba67-09dbf8575547

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