Publication: Phase asynchronous AMR execution for productive and performant astrophysical flows
Program
KU Authors
Co-Authors
Nguyen, Tan
Zhang, Weiqun
Almgren, Ann S.
Shalf, John
Advisor
Publication Date
2019
Language
English
Type
Conference proceeding
Journal Title
Journal ISSN
Volume Title
Abstract
Adaptive Mesh Refinement (AMR) is an approach to solving PDEs that reduces the computational and memory requirements at the expense of increased communication. Although adopting asynchronous execution can overcome communication issues, manually restructuring an AMR application to realize asynchrony is extremely complicated and hinders readability and long-term maintainability. To balance performance against productivity, we design a user-friendly API and adopt phase asynchronous execution model where all subgrids at an AMR level can be computed asynchronously. We apply the phase asynchrony to transform a real-world AMR application, CASTRO, which solves multicomponent compressible hydrodynamic equations for astrophysical flows. We evaluate the performance and programming effort required to use our carefully designed API and execution model for transitioning large legacy codes from synchronous to asynchronous execution up to 278,528 Intel-KNL cores. CASTRO is about 100K lines of code but less than 0.2% code changes are required to achieve significant performance improvement.
Description
Source:
Proceedings - International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2018
Publisher:
Institute of Electrical and Electronics Engineers Inc.
Keywords:
Subject
Computer Science