Publication: Dynamics of pattern formation and emergence of swarming in Caenorhabditis elegans
dc.contributor.department | N/A | |
dc.contributor.department | Department of Physics | |
dc.contributor.kuauthor | Demir, Esin | |
dc.contributor.kuauthor | Başaran, Mustafa | |
dc.contributor.kuauthor | Yaman, Yusuf İlker | |
dc.contributor.kuauthor | Kocabaş, Aşkın | |
dc.contributor.other | Department of Physics | |
dc.contributor.researchcenter | Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM) | |
dc.contributor.researchcenter | Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM) | |
dc.contributor.schoolcollegeinstitute | Graduate School of Sciences and Engineering | |
dc.contributor.schoolcollegeinstitute | College of Sciences | |
dc.contributor.yokid | N/A | |
dc.contributor.yokid | N/A | |
dc.contributor.yokid | N/A | |
dc.contributor.yokid | 227753 | |
dc.date.accessioned | 2024-11-09T12:46:04Z | |
dc.date.issued | 2020 | |
dc.description.abstract | Many animals collectively form complex patterns to tackle environmental difficulties. Several biological and physical factors, such as animal motility, population densities, and chemical cues, play significant roles in this process. However, very little is known about how sensory information interplays with these factors and controls the dynamics of pattern formation. Here, we study the direct relation between oxygen sensing, pattern formation, and emergence of swarming in active Caenorhabditis elegans aggregates. We find that when thousands of animals gather on food, bacteria-mediated decrease in oxygen level slows down the animals and triggers motility-induced phase separation. Three coupled factors-bacterial accumulation, aerotaxis, and population density-act together and control the entire dynamics. Furthermore, we find that biofilm-forming bacterial lawns including Bacillus subtilis and Pseudomonas aeruginosa strongly alter the collective dynamics due to the limited diffusibility of bacteria. Additionally, our theoretical model captures behavioral differences resulting from genetic variations and oxygen sensitivity. | |
dc.description.fulltext | YES | |
dc.description.indexedby | WoS | |
dc.description.indexedby | Scopus | |
dc.description.indexedby | PubMed | |
dc.description.openaccess | YES | |
dc.description.publisherscope | International | |
dc.description.sponsoredbyTubitakEu | TÜBİTAK | |
dc.description.sponsorship | Scientific and Technological Research Council of Turkey (TÜBİTAK) | |
dc.description.sponsorship | ESRC Research Centre on Micro-Social Change at the University of Essex | |
dc.description.sponsorship | Turkish Academy of the Sciences (Turkish Academy of Sciences (TÜBA)-GEBIP grant) | |
dc.description.sponsorship | Science Academy (BAGEP grant) | |
dc.description.sponsorship | British Academy | |
dc.description.version | Publisher version | |
dc.description.volume | 9 | |
dc.format | ||
dc.identifier.doi | 10.7554/eLife.52781 | |
dc.identifier.embargo | NO | |
dc.identifier.filenameinventoryno | IR02170 | |
dc.identifier.issn | 2050-084X | |
dc.identifier.link | https://doi.org/10.7554/eLife.52781 | |
dc.identifier.quartile | Q1 | |
dc.identifier.scopus | 2-s2.0-85084345766 | |
dc.identifier.uri | https://hdl.handle.net/20.500.14288/2463 | |
dc.identifier.wos | 531829300001 | |
dc.keywords | Collective behavior | |
dc.keywords | Natural variation | |
dc.keywords | Social-behavior | |
dc.keywords | Circuit | |
dc.keywords | Neurons | |
dc.keywords | Aggregation | |
dc.keywords | Pathways | |
dc.keywords | Driven | |
dc.language | English | |
dc.publisher | eLife Sciences Publications | |
dc.relation.grantno | 115F072 and 115S666 | |
dc.relation.grantno | IG 3275 | |
dc.relation.uri | http://cdm21054.contentdm.oclc.org/cdm/ref/collection/IR/id/8815 | |
dc.source | eLife | |
dc.subject | Life sciences and biomedicine | |
dc.title | Dynamics of pattern formation and emergence of swarming in Caenorhabditis elegans | |
dc.type | Journal Article | |
dspace.entity.type | Publication | |
local.contributor.authorid | N/A | |
local.contributor.authorid | N/A | |
local.contributor.authorid | N/A | |
local.contributor.authorid | 0000-0002-6930-1202 | |
local.contributor.kuauthor | Demir, Esin | |
local.contributor.kuauthor | Başaran, Mustafa | |
local.contributor.kuauthor | Yaman, Yusuf İlker | |
local.contributor.kuauthor | Kocabaş, Aşkın | |
relation.isOrgUnitOfPublication | c43d21f0-ae67-4f18-a338-bcaedd4b72a4 | |
relation.isOrgUnitOfPublication.latestForDiscovery | c43d21f0-ae67-4f18-a338-bcaedd4b72a4 |
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