Publication:
Investigation of oxygen-dependent motility and swarming behavior in nematode Caenorhabditis elegans

dc.contributor.coauthorN/A
dc.contributor.departmentDepartment of Physics
dc.contributor.facultymemberYes
dc.contributor.kuauthorKocabaş, Aşkın
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.date.accessioned2024-11-09T23:00:54Z
dc.date.issued2022
dc.description.abstractModel organism Caenorhabditis elegans can perform swarming behavior in nature. This behavior is intricately linked to the presence of bacteria and oxygen levels in the environment. The complex interplay of all these factors drives the emergence of a self-organized swarming response. The collective motility of this behavior is particularly controlled by the oxygen-dependent velocity profile of the animals which triggers phase separation into dense and dilute clusters. However, the exact velocity profile leading to this transition has not been determined yet. In this study, we experimentally identified this missing information by using a liquid environment. The main difference in this measurement is to use liquid culture to be able to stimulate both head and tail neurons with the same oxygen level. We utilized fiber optic-based sensors to precisely measure oxygen levels that correlated with the animal’s velocity. Finally, based on these experimental results, we modeled swarming behavior using phase separation principles.
dc.description.fulltextNo
dc.description.harvestedfromManual
dc.description.indexedbyScopus
dc.description.indexedbyTR Dizin
dc.description.openaccessN/A
dc.description.peerreviewstatusN/A
dc.description.publisherscopeNational
dc.description.readpublishN/A
dc.description.sponsoredbyTubitakEuEU
dc.description.sponsorshipThis study support from The European Molecular Biology Organization (EMBO).
dc.description.studentonlypublicationNo
dc.description.studentpublicationNo
dc.description.versionN/A
dc.identifier.WoSQuartileN/A
dc.identifier.doi10.5152/VetSciPract.2022.221323
dc.identifier.eissn2822-3608
dc.identifier.embargoN/A
dc.identifier.endpage48
dc.identifier.issue2
dc.identifier.scopus2-s2.0-85169846367
dc.identifier.startpage45
dc.identifier.urihttps://doi.org/10.5152/VetSciPract.2022.221323
dc.identifier.urihttps://hdl.handle.net/20.500.14288/8145
dc.identifier.volume17
dc.keywordsC. elegans
dc.keywordsMovement
dc.keywordsHerd
dc.language.isotur
dc.publisherAtatürk Üniversitesi Yayınlarıtr
dc.publisherAtatürk University Publicationsen
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofVeterinary Sciences and Practices
dc.relation.openaccessN/A
dc.rightsN/A
dc.subjectBiology
dc.subjectNeurobiology
dc.subjectAnimal behavior
dc.subjectLife sciences
dc.subjectDevelopmental biology
dc.subjectExperimental biology
dc.subjectBehavioral ecology
dc.titleInvestigation of oxygen-dependent motility and swarming behavior in nematode Caenorhabditis elegans
dc.title.alternativeNematod Caenorhabditis Elegans'ın oksijen seviyesine bağlı hareket ve sürü oluşturma davranışının belirlenmesitr
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.kuauthorKocabaş, Aşkın
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