Publication:
Controlling the synchronization and symmetry breaking of coupled bacterial pili on active biofilm carpets

dc.contributor.coauthorGedik, N.
dc.contributor.coauthorKocabaş, C.
dc.contributor.coauthorÖzdemir, Ş. K.
dc.contributor.departmentKUYTAM (Koç University Surface Science and Technology Center)
dc.contributor.departmentDepartment of Physics
dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.kuauthorYaman, Yusuf İlker
dc.contributor.kuauthorBaşaran, Mustafa
dc.contributor.kuauthorKocabaş, Aşkın
dc.contributor.kuauthorAltın, Baha
dc.contributor.kuauthorGünay, Enes Talha
dc.contributor.kuauthorÜnlü, Alp
dc.contributor.kuauthorGediz, Yiğithan
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.contributor.schoolcollegeinstituteResearch Center
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.date.accessioned2026-07-19T19:48:36Z
dc.date.issued2025
dc.description.abstractIn the low Reynolds number regime, active biological systems utilize nonreciprocal cyclic activities to achieve motility, as seen in the spinning of bacterial flagella and the beating of cilia. Coupling among these active mechanical components leads to synchronization and emergence of metachronal waves. Here, we report that biofilms of Pseudomonas nitroreducens form active carpet-like surfaces textured with diverse topological defects, generating Mexican-wave-like collective behavior in which bacteria periodically lift up. On these active surfaces, non-reciprocally coupled extension and retraction activities of bacterial pili drive these collective oscillations. Surprisingly, this collective behavior exhibits left-right asymmetry across the biofilm driving unidirectionally propagating waves. We discover that this directionality is primarily governed by an aging-related frequency gradient across the biofilm. Leveraging these insights, we further demonstrate the ability to control the collective dynamics of these waves, including symmetry breaking, transitions from spiral waves into target and propagating plane waves by manipulating the elastic properties of biofilms. Overall, our findings illuminate the fundamental role of nonreciprocally interacting active components in regulating synchronization, collective dynamics, and symmetry-breaking phenomena in biological systems.
dc.description.harvestedfromManual
dc.description.indexedbyWOS
dc.description.indexedbyPubMed
dc.description.publisherscopeInternational
dc.description.readpublishN/A
dc.description.sponsoredbyTubitakEuTÜBİTAK
dc.description.sponsorshipThis work was supported by Air Force Office of Scientific Research (AFOSR) under Grant No: FA9550-22-1-0431 with Program Manager Ali Sayir and Tubitak Project No: 121C159 and 123C580. SKO acknowledges the support from AFOSR Multidisciplinary University Research Initiative (MURI) Award No. FA9550-21-1-0202. We thank Zeiss, the Turkey division, and Kenan Do & gbreve;ru for the digital microscopy installation and training. [Acknowledgements]: This work was supported by Air Force Office of Scientific Research (AFOSR) under Grant No: FA9550-22-1-0431 with Program Manager Ali Sayir and Tübitak Project No: 121C159 and 123C580. SKO acknowledges the support from AFOSR Multidisciplinary University Research Initiative (MURI) Award No. FA9550-21-1-0202. We thank Zeiss, the Turkey division, and Kenan Doğru for the digital microscopy installation and training.
dc.description.versionPublished Version
dc.identifier.ScopusPercentileN/A
dc.identifier.ScopusQuartileN/A
dc.identifier.WoSPercentileN/A
dc.identifier.WoSQuartileN/A
dc.identifier.doi10.7554/elife.107609
dc.identifier.embargoN/A
dc.identifier.grantnoFA9550-22-1-0431
dc.identifier.grantno121C159
dc.identifier.grantnoFA9550-21-1-0202
dc.identifier.grantno123C580
dc.identifier.issn2050-084X
dc.identifier.pubmed42345289
dc.identifier.urihttp://doi.org/10.7554/elife.107609
dc.identifier.urihttps://hdl.handle.net/20.500.14288/33559
dc.identifier.volume14
dc.identifier.wos001805205300001
dc.keywordsSynchronization
dc.keywordsBiofilm
dc.keywordsActive matter
dc.keywordsSymmetry breaking
dc.keywordsNonreciprocal
dc.languageeng
dc.publishereLife Sciences Publications
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofElife
dc.relation.openaccessN/A
dc.rightsN/A
dc.rights.uriN/A
dc.subjectBiology
dc.titleControlling the synchronization and symmetry breaking of coupled bacterial pili on active biofilm carpets
dc.typeJournal Article
dspace.entity.typePublication
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