Publication: Controlling the synchronization and symmetry breaking of coupled bacterial pili on active biofilm carpets
| dc.contributor.coauthor | Gedik, N. | |
| dc.contributor.coauthor | Kocabaş, C. | |
| dc.contributor.coauthor | Özdemir, Ş. K. | |
| dc.contributor.department | KUYTAM (Koç University Surface Science and Technology Center) | |
| dc.contributor.department | Department of Physics | |
| dc.contributor.department | Graduate School of Sciences and Engineering | |
| dc.contributor.kuauthor | Yaman, Yusuf İlker | |
| dc.contributor.kuauthor | Başaran, Mustafa | |
| dc.contributor.kuauthor | Kocabaş, Aşkın | |
| dc.contributor.kuauthor | Altın, Baha | |
| dc.contributor.kuauthor | Günay, Enes Talha | |
| dc.contributor.kuauthor | Ünlü, Alp | |
| dc.contributor.kuauthor | Gediz, Yiğithan | |
| dc.contributor.schoolcollegeinstitute | College of Sciences | |
| dc.contributor.schoolcollegeinstitute | Research Center | |
| dc.contributor.schoolcollegeinstitute | GRADUATE SCHOOL OF SCIENCES AND ENGINEERING | |
| dc.date.accessioned | 2026-07-19T19:48:36Z | |
| dc.date.issued | 2025 | |
| dc.description.abstract | In the low Reynolds number regime, active biological systems utilize nonreciprocal cyclic activities to achieve motility, as seen in the spinning of bacterial flagella and the beating of cilia. Coupling among these active mechanical components leads to synchronization and emergence of metachronal waves. Here, we report that biofilms of Pseudomonas nitroreducens form active carpet-like surfaces textured with diverse topological defects, generating Mexican-wave-like collective behavior in which bacteria periodically lift up. On these active surfaces, non-reciprocally coupled extension and retraction activities of bacterial pili drive these collective oscillations. Surprisingly, this collective behavior exhibits left-right asymmetry across the biofilm driving unidirectionally propagating waves. We discover that this directionality is primarily governed by an aging-related frequency gradient across the biofilm. Leveraging these insights, we further demonstrate the ability to control the collective dynamics of these waves, including symmetry breaking, transitions from spiral waves into target and propagating plane waves by manipulating the elastic properties of biofilms. Overall, our findings illuminate the fundamental role of nonreciprocally interacting active components in regulating synchronization, collective dynamics, and symmetry-breaking phenomena in biological systems. | |
| dc.description.harvestedfrom | Manual | |
| dc.description.indexedby | WOS | |
| dc.description.indexedby | PubMed | |
| dc.description.publisherscope | International | |
| dc.description.readpublish | N/A | |
| dc.description.sponsoredbyTubitakEu | TÜBİTAK | |
| dc.description.sponsorship | This work was supported by Air Force Office of Scientific Research (AFOSR) under Grant No: FA9550-22-1-0431 with Program Manager Ali Sayir and Tubitak Project No: 121C159 and 123C580. SKO acknowledges the support from AFOSR Multidisciplinary University Research Initiative (MURI) Award No. FA9550-21-1-0202. We thank Zeiss, the Turkey division, and Kenan Do & gbreve;ru for the digital microscopy installation and training. [Acknowledgements]: This work was supported by Air Force Office of Scientific Research (AFOSR) under Grant No: FA9550-22-1-0431 with Program Manager Ali Sayir and Tübitak Project No: 121C159 and 123C580. SKO acknowledges the support from AFOSR Multidisciplinary University Research Initiative (MURI) Award No. FA9550-21-1-0202. We thank Zeiss, the Turkey division, and Kenan Doğru for the digital microscopy installation and training. | |
| dc.description.version | Published Version | |
| dc.identifier.ScopusPercentile | N/A | |
| dc.identifier.ScopusQuartile | N/A | |
| dc.identifier.WoSPercentile | N/A | |
| dc.identifier.WoSQuartile | N/A | |
| dc.identifier.doi | 10.7554/elife.107609 | |
| dc.identifier.embargo | N/A | |
| dc.identifier.grantno | FA9550-22-1-0431 | |
| dc.identifier.grantno | 121C159 | |
| dc.identifier.grantno | FA9550-21-1-0202 | |
| dc.identifier.grantno | 123C580 | |
| dc.identifier.issn | 2050-084X | |
| dc.identifier.pubmed | 42345289 | |
| dc.identifier.uri | http://doi.org/10.7554/elife.107609 | |
| dc.identifier.uri | https://hdl.handle.net/20.500.14288/33559 | |
| dc.identifier.volume | 14 | |
| dc.identifier.wos | 001805205300001 | |
| dc.keywords | Synchronization | |
| dc.keywords | Biofilm | |
| dc.keywords | Active matter | |
| dc.keywords | Symmetry breaking | |
| dc.keywords | Nonreciprocal | |
| dc.language | eng | |
| dc.publisher | eLife Sciences Publications | |
| dc.relation.affiliation | Koç University | |
| dc.relation.collection | Koç University Institutional Repository | |
| dc.relation.ispartof | Elife | |
| dc.relation.openaccess | N/A | |
| dc.rights | N/A | |
| dc.rights.uri | N/A | |
| dc.subject | Biology | |
| dc.title | Controlling the synchronization and symmetry breaking of coupled bacterial pili on active biofilm carpets | |
| dc.type | Journal Article | |
| dspace.entity.type | Publication | |
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