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Anharmonicity, mode-coupling and entropy in a fluctuating native protein

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dc.contributor.coauthorN/A
dc.contributor.departmentDepartment of Physics
dc.contributor.departmentDepartment of Computer Engineering
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.kuauthorKabakçıoğlu, Alkan
dc.contributor.kuauthorYüret, Deniz
dc.contributor.kuauthorGür, Mert
dc.contributor.kuauthorErman, Burak
dc.contributor.kuprofileFaculty Member
dc.contributor.kuprofileFaculty Member
dc.contributor.kuprofilePhD Student
dc.contributor.kuprofileFaculty Member
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.contributor.yokid49854
dc.contributor.yokid179996
dc.contributor.yokid216930
dc.contributor.yokid179997
dc.date.accessioned2024-11-09T23:34:18Z
dc.date.issued2010
dc.description.abstractWe develop a general framework for the analysis of residue fluctuations that simultaneously incorporates anharmonicity and mode-coupling in a unified formalism. We show that both deviations from the Gaussian model are important for modeling the multidimensional energy landscape of the protein Crambin (1EJG) in the vicinity of its native state. the effect of anharmonicity and mode-coupling on the fluctuational entropy is in the order of a few percent.
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.issue4
dc.description.openaccessNO
dc.description.publisherscopeInternational
dc.description.volume7
dc.identifier.doi10.1088/1478-3975/7/4/046005
dc.identifier.eissn1478-3975
dc.identifier.issn1478-3967
dc.identifier.quartileQ3
dc.identifier.scopus2-s2.0-79551489983
dc.identifier.urihttp://dx.doi.org/10.1088/1478-3975/7/4/046005
dc.identifier.urihttps://hdl.handle.net/20.500.14288/12328
dc.identifier.wos285334500012
dc.keywordsDynamics
dc.keywordsCrambin
dc.languageEnglish
dc.publisherIop Publishing Ltd
dc.sourcePhysical Biology
dc.subjectBiochemistry
dc.subjectMolecular biology
dc.subjectBiophysics
dc.titleAnharmonicity, mode-coupling and entropy in a fluctuating native protein
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.authorid0000-0002-9831-3632
local.contributor.authorid0000-0002-7039-0046
local.contributor.authorid0000-0003-0983-4397
local.contributor.authorid0000-0002-2496-6059
local.contributor.kuauthorKabakçıoğlu, Alkan
local.contributor.kuauthorYüret, Deniz
local.contributor.kuauthorGür, Mert
local.contributor.kuauthorErman, Burak
local.publication.orgunit1College of Sciences
local.publication.orgunit1College of Engineering
local.publication.orgunit1GRADUATE SCHOOL OF SCIENCES AND ENGINEERING
local.publication.orgunit2Department of Physics
local.publication.orgunit2Department of Computer Engineering
local.publication.orgunit2Department of Chemical and Biological Engineering
local.publication.orgunit2Graduate School of Sciences and Engineering
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