Publication:
Proof for minimum sensitivity of nested canalizing functions, a fractal bound, and implications for biology

dc.contributor.departmentDepartment of Physics
dc.contributor.kuauthorKabakçıoğlu, Alkan
dc.contributor.kuauthorÇoban, Hamza
dc.contributor.kuprofileFaculty Member
dc.contributor.otherDepartment of Physics
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.contributor.yokid49854
dc.contributor.yokidN/A
dc.date.accessioned2024-11-09T12:39:47Z
dc.date.issued2022
dc.description.abstractWe prove that nested canalizing functions are the minimum-sensitivity Boolean functions for any activity ratio and we determine the functional form of this boundary which has a nontrivial fractal structure. We further observe that the majority of the gene regulatory functions found in known biological networks (submitted to the Cell Collective database) lie on the line of minimum sensitivity which paradoxically remains largely in the unstable regime. Our results provide a quantitative basis for the argument that an evolutionary preference for nested canalizing functions in gene regulation (e.g., for higher robustness) and for plasticity of gene activity are sufficient for concentration of such systems near the ""edge of chaos.""
dc.description.fulltextYES
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.issue11
dc.description.openaccessYES
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuN/A
dc.description.sponsorshipKoç University KUIS AI Center Fellowship Programme
dc.description.versionPublisher version
dc.description.volume128
dc.formatpdf
dc.identifier.doi10.1103/PhysRevLett.128.118101
dc.identifier.eissn1079-7114
dc.identifier.embargoNO
dc.identifier.filenameinventorynoIR03557
dc.identifier.issn0031-9007
dc.identifier.linkhttps://doi.org/10.1103/PhysRevLett.128.118101
dc.identifier.quartileQ1
dc.identifier.scopus2-s2.0-85126945219
dc.identifier.urihttps://hdl.handle.net/20.500.14288/2131
dc.identifier.wos772696500007
dc.keywordsActivity ratios
dc.keywordsBiological networks
dc.keywordsCanalizing functions
dc.keywordsFractal structures
dc.keywordsFunctional forms
dc.keywordsGene activities
dc.keywordsGene-regulation
dc.keywordsHigh robustness
dc.keywordsMinimum sensitivities
dc.keywordsRegulatory functions
dc.languageEnglish
dc.publisherAmerican Physical Society (APS)
dc.relation.grantnoNA
dc.relation.urihttp://cdm21054.contentdm.oclc.org/cdm/ref/collection/IR/id/10415
dc.sourcePhysical Review Letters
dc.subjectPhysics
dc.titleProof for minimum sensitivity of nested canalizing functions, a fractal bound, and implications for biology
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.authorid0000-0002-9831-3632
local.contributor.authoridN/A
local.contributor.kuauthorKabakçıoğlu, Alkan
local.contributor.kuauthorÇoban, Hamza
relation.isOrgUnitOfPublicationc43d21f0-ae67-4f18-a338-bcaedd4b72a4
relation.isOrgUnitOfPublication.latestForDiscoveryc43d21f0-ae67-4f18-a338-bcaedd4b72a4

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