Publication: A survey of available tools and web servers for analysis of protein-protein interactions and interfaces
dc.contributor.coauthor | Nussinov, Ruth | |
dc.contributor.department | Department of Computer Engineering | |
dc.contributor.department | Department of Chemical and Biological Engineering | |
dc.contributor.department | CCBB (The Center for Computational Biology and Bioinformatics) | |
dc.contributor.department | Graduate School of Sciences and Engineering | |
dc.contributor.kuauthor | Gürsoy, Attila | |
dc.contributor.kuauthor | Keskin, Özlem | |
dc.contributor.kuauthor | Makinacı, Gözde Kar | |
dc.contributor.kuauthor | Tunçbağ, Nurcan | |
dc.contributor.schoolcollegeinstitute | College of Engineering | |
dc.contributor.schoolcollegeinstitute | GRADUATE SCHOOL OF SCIENCES AND ENGINEERING | |
dc.contributor.schoolcollegeinstitute | Research Center | |
dc.date.accessioned | 2024-11-09T23:13:29Z | |
dc.date.issued | 2009 | |
dc.description.abstract | The unanimous agreement that cellular processes are (largely) governed by interactions between proteins has led to enormous community efforts culminating in overwhelming information relating to these proteins; to the regulation of their interactions, to the way in which they interact and to the function which is determined by these interactions. These data have been organized in databases and servers. However, to make these really useful, it is essential not only to be aware of these, but in particular to have a working knowledge of which tools to use for a given problem; what are the tool advantages and drawbacks; and no less important how to combine these for a particular goal since usually it is not one tool, but some combination of tool-modules that is needed. This is the goal of this review. | |
dc.description.indexedby | WOS | |
dc.description.indexedby | Scopus | |
dc.description.indexedby | PubMed | |
dc.description.issue | 3 | |
dc.description.openaccess | YES | |
dc.description.publisherscope | International | |
dc.description.sponsoredbyTubitakEu | N/A | |
dc.description.sponsorship | Turkish Academy of Sciences Distinguished Young Investigator Award | |
dc.description.sponsorship | Scientific and Technological Research Council of Turkey | |
dc.description.sponsorship | National Cancer Institute | |
dc.description.sponsorship | National Institutes of Health [N01-CO-12400] | |
dc.description.sponsorship | Center for Cancer Research (partial) Turkish Academy of Sciences Distinguished Young Investigator Award (to O.K.) | |
dc.description.sponsorship | the Scientific and Technological Research Council of Turkey Fellowship (to N.T.). Federal funds from the National Cancer Institute | |
dc.description.sponsorship | National Institutes of Health | |
dc.description.sponsorship | (under contract number N01-CO-12400). Intramural Research Program of the National Institutes of Health | |
dc.description.sponsorship | National Cancer Institute | |
dc.description.sponsorship | Center for Cancer Research (partial). | |
dc.description.volume | 10 | |
dc.identifier.doi | 10.1093/bib/bbp001 | |
dc.identifier.eissn | 1477-4054 | |
dc.identifier.issn | 1467-5463 | |
dc.identifier.quartile | Q1 | |
dc.identifier.scopus | 2-s2.0-65549157572 | |
dc.identifier.uri | https://doi.org/10.1093/bib/bbp001 | |
dc.identifier.uri | https://hdl.handle.net/20.500.14288/9980 | |
dc.identifier.wos | 265522200002 | |
dc.keywords | Protein-protein interactions | |
dc.keywords | Protein-protein interfaces | |
dc.keywords | Binding site prediction | |
dc.keywords | Docking | |
dc.keywords | Web servers | |
dc.keywords | Databases | |
dc.keywords | Binding site prediction | |
dc.keywords | Hot-spots | |
dc.keywords | Shape complementarity | |
dc.keywords | Quaternary structure | |
dc.keywords | Domain-domain | |
dc.keywords | Database | |
dc.keywords | Residues | |
dc.keywords | Conservation | |
dc.keywords | Recognition | |
dc.keywords | Complexes | |
dc.language.iso | eng | |
dc.publisher | Oxford University Press (OUP) | |
dc.relation.ispartof | Briefings in Bioinformatics | |
dc.subject | Biochemical research methods | |
dc.subject | Mathematical and computational biology | |
dc.title | A survey of available tools and web servers for analysis of protein-protein interactions and interfaces | |
dc.type | Review | |
dspace.entity.type | Publication | |
local.contributor.kuauthor | Keskin, Özlem | |
local.contributor.kuauthor | Gürsoy, Attila | |
local.contributor.kuauthor | Makinacı, Gözde Kar | |
local.contributor.kuauthor | Tunçbağ, Nurcan | |
local.publication.orgunit1 | College of Engineering | |
local.publication.orgunit1 | GRADUATE SCHOOL OF SCIENCES AND ENGINEERING | |
local.publication.orgunit1 | Research Center | |
local.publication.orgunit2 | Department of Chemical and Biological Engineering | |
local.publication.orgunit2 | Department of Computer Engineering | |
local.publication.orgunit2 | CCBB (The Center for Computational Biology and Bioinformatics) | |
local.publication.orgunit2 | Graduate School of Sciences and Engineering | |
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