Publication: Analysis of correlations between energy and residue fluctuations in native proteins and determination of specific sites for binding
dc.contributor.coauthor | Haliloğlu, Turkan | |
dc.contributor.department | Department of Chemical and Biological Engineering | |
dc.contributor.kuauthor | Erman, Burak | |
dc.contributor.kuprofile | Faculty Member | |
dc.contributor.yokid | 179997 | |
dc.date.accessioned | 2024-11-09T13:51:37Z | |
dc.date.issued | 2009 | |
dc.description.abstract | The Gaussian network model is used to derive the correlations between energy and residue fluctuations in native proteins. Residues are identified that respond strongly to energy fluctuations and that display correlations with the remaining residues of the protein at the highest modes. We postulate that these residues are located at specific sites for drug binding. We test the validity of this postulate on a data set of 33 structurally distinct proteins in the unbound state. Detailed results are presented for drug binding to the HIV protease. | |
dc.description.fulltext | YES | |
dc.description.indexedby | WoS | |
dc.description.indexedby | Scopus | |
dc.description.issue | 8 | |
dc.description.openaccess | YES | |
dc.description.publisherscope | International | |
dc.description.sponsoredbyTubitakEu | EU | |
dc.description.sponsorship | HIV | |
dc.description.sponsorship | European Union (European Union) | |
dc.description.sponsorship | Boğaziçi University Funds | |
dc.description.version | Publisher version | |
dc.description.volume | 102 | |
dc.format | ||
dc.identifier.doi | 10.1103/PhysRevLett.102.088103 | |
dc.identifier.eissn | 1079-7114 | |
dc.identifier.embargo | NO | |
dc.identifier.filenameinventoryno | IR00802 | |
dc.identifier.issn | 0031-9007 | |
dc.identifier.link | https://doi.org/10.1103/PhysRevLett.102.088103 | |
dc.identifier.quartile | Q1 | |
dc.identifier.scopus | 2-s2.0-61849151934 | |
dc.identifier.uri | https://hdl.handle.net/20.500.14288/3954 | |
dc.identifier.wos | 263816200073 | |
dc.keywords | Hiv-1 Protease | |
dc.keywords | Human-Immunodeficiency | |
dc.keywords | Single-Parameter | |
dc.keywords | Folded Proteins | |
dc.keywords | Motions | |
dc.keywords | Prediction | |
dc.keywords | Mutations | |
dc.keywords | Dynamics | |
dc.language | English | |
dc.publisher | American Physical Society (APS) | |
dc.relation.grantno | FP6-2004-ACC-SSA-2 | |
dc.relation.grantno | 517991 | |
dc.relation.grantno | 08A505D | |
dc.relation.uri | http://cdm21054.contentdm.oclc.org/cdm/ref/collection/IR/id/815 | |
dc.source | Physical Review Letters | |
dc.subject | Physics, Multidisciplinary | |
dc.title | Analysis of correlations between energy and residue fluctuations in native proteins and determination of specific sites for binding | |
dc.type | Journal Article | |
dspace.entity.type | Publication | |
local.contributor.authorid | 0000-0002-2496-6059 | |
local.contributor.kuauthor | Erman, Burak | |
local.publication.orgunit1 | College of Engineering | |
local.publication.orgunit2 | Department of Chemical and Biological Engineering | |
relation.isOrgUnitOfPublication | c747a256-6e0c-4969-b1bf-3b9f2f674289 | |
relation.isOrgUnitOfPublication.latestForDiscovery | c747a256-6e0c-4969-b1bf-3b9f2f674289 |
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