Publication:
Rapid turnaround fabrication of peptide nucleic acid (pna)-immobilized nanowire biosensors by o2-plasma assisted lithography of e-beam resists

dc.contributor.coauthorŞahin, Osman
dc.contributor.coauthorAlbayrak, Oğuz Mustafa
dc.contributor.coauthorYapıcı, Murat Kaya
dc.contributor.departmentKUTTAM (Koç University Research Center for Translational Medicine)
dc.contributor.departmentGraduate School of Health Sciences
dc.contributor.departmentSchool of Medicine
dc.contributor.kuauthorGözüaçık, Devrim
dc.contributor.kuauthorGüzel, Ayşe Seray
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF HEALTH SCIENCES
dc.contributor.schoolcollegeinstituteResearch Center
dc.contributor.schoolcollegeinstituteSCHOOL OF MEDICINE
dc.date.accessioned2024-12-29T09:36:01Z
dc.date.issued2023
dc.description.abstractNucleic acid-based biosensors are useful to precisely detect genetic footprints at low concentrations with high specificity and selectivity. Among various sensing modalities, approaches based on direct electrical measurements offer advantages in label-free detection, portability for point-of-care analysis, and direct integration with electronic readout circuits facilitating data processing, transfer and remote interpretation. In this work, we demonstrate a novel fabrication approach which couples conventional optical lithography and oxygen plasma-based etching with high-resolution electronbeam lithography to rapidly pattern poly(methyl methacrylate) (PMMA) e-beam resist at varying feature sizes (i.e. both large and small device areas), which would otherwise require extremely long exposure durations up to days with standalone e-beam lithography. This allows fabrication of realistic biosensor chips in arrayed format, co-integrated with millimeter (mm)-scale electrical peripherals to nanoscale (nm) sensing elements utilizing a simple and high-throughput process. The feasibility of the approach is demonstrated by successful immobilization of thiol-functionalized peptide nucleic acid (PNA) probes on similar to 60 nm-wide gold nanowires (AuNWs) enclosed in an SU-8 fluidic reservoir. Fabrication of biochips and self-assembly of PNA probes are characterized by optical microscope imaging, scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDX), and Fourier-transform infrared spectroscopy (FTIR).
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuTÜBİTAK
dc.description.sponsorshipThis work was supported by The Scientific and Technological Research Council of Turkey (TUBITAK) grant number 218S893. Professor Murat Kaya Yapici appreciates the support of the Turkish Academy of Sciences (TUBA) within the framework of the TUBA Outstanding Young Scientist Award Program (GEBIP).
dc.identifier.doi10.1109/BioSensors58001.2023.10280935
dc.identifier.isbn979-8-3503-4604-6
dc.identifier.quartileN/A
dc.identifier.scopus2-s2.0-85175982586
dc.identifier.urihttps://doi.org/10.1109/BioSensors58001.2023.10280935
dc.identifier.urihttps://hdl.handle.net/20.500.14288/21904
dc.identifier.wos1094618600025
dc.keywordsElectron beam lithography
dc.keywordsO2 plasma
dc.keywordsThroughput
dc.keywordsLarge-area patterning
dc.keywordsGold
dc.keywordsNanowire
dc.keywordsBiosensor
dc.keywordsImmobilization
dc.keywordsPeptide nucleic acid
dc.keywordsThiol.
dc.language.isoeng
dc.publisherIEEE
dc.relation.grantnoScientific and Technological Research Council of Turkey (TUBITAK) [218S893]
dc.relation.grantnoTurkish Academy of Sciences (TUBA)
dc.relation.ispartof2023 IEEE Biosensors Conference, Biosensors
dc.subjectEngineering, Biomedical
dc.titleRapid turnaround fabrication of peptide nucleic acid (pna)-immobilized nanowire biosensors by o2-plasma assisted lithography of e-beam resists
dc.typeConference Proceeding
dspace.entity.typePublication
local.contributor.kuauthorGüzel, Ayşe Seray
local.contributor.kuauthorGözüaçık, Devrim
local.publication.orgunit1GRADUATE SCHOOL OF HEALTH SCIENCES
local.publication.orgunit1SCHOOL OF MEDICINE
local.publication.orgunit1Research Center
local.publication.orgunit2KUTTAM (Koç University Research Center for Translational Medicine)
local.publication.orgunit2School of Medicine
local.publication.orgunit2Graduate School of Health Sciences
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