Publication: Sequence alignment using simulated annealing
Program
KU-Authors
KU Authors
Co-Authors
Güven, Can
Publication Date
Language
Type
Embargo Status
Journal Title
Journal ISSN
Volume Title
Alternative Title
Abstract
We apply simulated annealing to amino acid sequence alignment, a fundamental problem in bioinformatics, particularly relevant to evolution. Our goal was obtaining results comparable to those reached through dynamic programming algorithms, like the Needleman-Wunsch algorithm, as well as making a connection between physics and bioinformatics through a representative example.
Source
Publisher
Elsevier
Subject
Physics
Citation
Has Part
Source
Physica A-Statistical Mechanics And Its Applications
Book Series Title
Edition
DOI
10.1016/j.physa.2010.02.015