Publication:
Critical dynamics in biological Boolean networks follows from symmetric response to input genes

dc.contributor.departmentN/A
dc.contributor.departmentDepartment of Physics
dc.contributor.kuauthorÇoban, Hamza
dc.contributor.kuauthorKabakçıoğlu, Alkan
dc.contributor.kuprofileMaster Student
dc.contributor.kuprofileFaculty Member
dc.contributor.otherDepartment of Physics
dc.contributor.schoolcollegeinstituteGraduate School of Sciences and Engineering
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.contributor.yokidN/A
dc.contributor.yokid49854
dc.date.accessioned2024-11-09T23:00:04Z
dc.date.issued2022
dc.description.abstracta recent observation on an extensive collection of biological gene regulatory networks suggests that the regulatory dynamics is tuned to remain close to the order-chaos boundary in the Lyapunov sense [1]. We here investigate, from a mathematical perspective, the structural/functional constraints which give rise to such accumulation around criticality in these systems. While the role of canalizing functions in this respect is well established, we find that critical sensitivity to small input variations also follows from an over-abundance of symmetrical inputs, i.e. regulatory genes invoking identical or complementary responses on their common target. a random network ensemble constructed to have the same distribution of symmetric inputs as in the above collection of biological networks captures the dependence of the sensitivity on mean activity bias, A nontrivial characteristic which the canalizing ensemble fails to fully reproduce.
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.indexedbyTR Dizin
dc.description.issue6
dc.description.openaccessYES
dc.description.publisherscopeNational
dc.description.volume46
dc.identifier.doi10.55730/1300-0101.2727
dc.identifier.eissn1303-6122
dc.identifier.issn1300-0101
dc.identifier.quartileN/A
dc.identifier.scopus2-s2.0-85146895303
dc.identifier.urihttp://dx.doi.org/10.55730/1300-0101.2727
dc.identifier.urihttps://hdl.handle.net/20.500.14288/7991
dc.identifier.wos906390000004
dc.keywordsBiomolecular dynamics
dc.keywordsGene expression
dc.keywordsPatterns in complex systems
dc.keywordsSelf-organization
dc.keywordsTranscrip-tion
dc.languageEnglish
dc.publisherScientific and Technological Research Council Turkey
dc.sourceTurkish Journal of Physics
dc.subjectPhysics
dc.titleCritical dynamics in biological Boolean networks follows from symmetric response to input genes
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.authoridN/A
local.contributor.authorid0000-0002-9831-3632
local.contributor.kuauthorÇoban, Hamza
local.contributor.kuauthorKabakçıoğlu, Alkan
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relation.isOrgUnitOfPublication.latestForDiscoveryc43d21f0-ae67-4f18-a338-bcaedd4b72a4

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