Publication:
Critical dynamics in biological Boolean networks follows from symmetric response to input genes

dc.contributor.departmentDepartment of Physics
dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.kuauthorÇoban, Hamza
dc.contributor.kuauthorKabakçıoğlu, Alkan
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.date.accessioned2024-11-09T23:00:04Z
dc.date.issued2022
dc.description.abstracta recent observation on an extensive collection of biological gene regulatory networks suggests that the regulatory dynamics is tuned to remain close to the order-chaos boundary in the Lyapunov sense [1]. We here investigate, from a mathematical perspective, the structural/functional constraints which give rise to such accumulation around criticality in these systems. While the role of canalizing functions in this respect is well established, we find that critical sensitivity to small input variations also follows from an over-abundance of symmetrical inputs, i.e. regulatory genes invoking identical or complementary responses on their common target. a random network ensemble constructed to have the same distribution of symmetric inputs as in the above collection of biological networks captures the dependence of the sensitivity on mean activity bias, A nontrivial characteristic which the canalizing ensemble fails to fully reproduce.
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.indexedbyTR Dizin
dc.description.issue6
dc.description.openaccessYES
dc.description.publisherscopeNational
dc.description.sponsoredbyTubitakEuN/A
dc.description.volume46
dc.identifier.doi10.55730/1300-0101.2727
dc.identifier.eissn1303-6122
dc.identifier.issn1300-0101
dc.identifier.quartileN/A
dc.identifier.scopus2-s2.0-85146895303
dc.identifier.urihttps://doi.org/10.55730/1300-0101.2727
dc.identifier.urihttps://hdl.handle.net/20.500.14288/7991
dc.identifier.wos906390000004
dc.keywordsBiomolecular dynamics
dc.keywordsGene expression
dc.keywordsPatterns in complex systems
dc.keywordsSelf-organization
dc.keywordsTranscrip-tion
dc.language.isoeng
dc.publisherScientific and Technological Research Council Turkey
dc.relation.ispartofTurkish Journal of Physics
dc.subjectPhysics
dc.titleCritical dynamics in biological Boolean networks follows from symmetric response to input genes
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.kuauthorÇoban, Hamza
local.contributor.kuauthorKabakçıoğlu, Alkan
local.publication.orgunit1GRADUATE SCHOOL OF SCIENCES AND ENGINEERING
local.publication.orgunit1College of Sciences
local.publication.orgunit2Department of Physics
local.publication.orgunit2Graduate School of Sciences and Engineering
relation.isOrgUnitOfPublicationc43d21f0-ae67-4f18-a338-bcaedd4b72a4
relation.isOrgUnitOfPublication3fc31c89-e803-4eb1-af6b-6258bc42c3d8
relation.isOrgUnitOfPublication.latestForDiscoveryc43d21f0-ae67-4f18-a338-bcaedd4b72a4
relation.isParentOrgUnitOfPublicationaf0395b0-7219-4165-a909-7016fa30932d
relation.isParentOrgUnitOfPublication434c9663-2b11-4e66-9399-c863e2ebae43
relation.isParentOrgUnitOfPublication.latestForDiscoveryaf0395b0-7219-4165-a909-7016fa30932d

Files

Original bundle

Now showing 1 - 1 of 1
Thumbnail Image
Name:
IR04240.pdf
Size:
539.9 KB
Format:
Adobe Portable Document Format