Publication:
Enhanced heterotetrameric assembly of potato ADP-Glucose pyrophosphorylase using reverse genetics

dc.contributor.coauthorCevahir, Gül
dc.contributor.departmentDepartment of Molecular Biology and Genetics
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.facultymemberYes
dc.contributor.kuauthorCan, Fatma Betül
dc.contributor.kuauthorKavaklı, İbrahim Halil
dc.contributor.kuauthorKoper, Kaan
dc.contributor.kuauthorSeferoğlu, Ayşe Bengisu
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.date.accessioned2024-11-09T22:56:17Z
dc.date.issued2014
dc.description.abstractADP-glucose pyrophosphorylase (AGPase) is a key allosteric enzyme in plant starch biosynthesis. Plant AGPase is a heterotetrameric enzyme that consists of large (LS) and small subunits (SS), which are encoded by two different genes. Computational and experimental studies have revealed that the heterotetrameric assembly of AGPase is thermodynamically weak. Modeling studies followed by the mutagenesis of the LS of the potato AGPase identified a heterotetramer-deficient mutant, LSR88A. To enhance heterotetrameric assembly, LSR88A cDNA was subjected to error-prone PCR, and second-site revertants were identified according to their ability to restore glycogen accumulation, as assessed with iodine staining. Selected mutations were introduced into the wild-type (WT) LS and co-expressed with the WT SS in Escherichia coli glgC(-). The biochemical characterization of revertants revealed that (LSSSWT)-S-I90V, (LSSSWT)-S-Y378C and (LSSSWT)-S-D410G mutants displayed enhanced heterotetrameric assembly with the WT SS. Among these mutants, (LSSSWT)-S-Y378C AGPase displayed increased heat stability compared with the WT enzyme. Kinetic characterization of the mutants indicated that the (LSSSWT)-S-I90V and (LSSSWT)-S-Y378C AGPases have comparable allosteric and kinetic properties. However, the (LSSSWT)-S-D410G mutant exhibited altered allosteric properties of being less responsive and more sensitive to 3-phosphoglyceric acid activation and inorganic phosphate inhibition. This study not only enhances our understanding of the interaction between the SS and the LS of AGPase but also enables protein engineering to obtain enhanced assembled heat-stable variants of AGPase, which can be used for the improvement of plant yields.
dc.description.fulltextNo
dc.description.harvestedfromManual
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.openaccessYES
dc.description.peerreviewstatusN/A
dc.description.publisherscopeInternational
dc.description.readpublishN/A
dc.description.sponsoredbyTubitakEuTÜBİTAK
dc.description.sponsorshipTUBITAK-TBAG [110T058]
dc.description.sponsorshipIstanbul University BAP project [3032]
dc.description.sponsorshipTUBITAK-BIDEP [2211] This work was supported by TUBITAK-TBAG 110T058
dc.description.sponsorshipIstanbul University BAP project 3032
dc.description.sponsorshipTUBITAK-BIDEP 2211 [PhD fellowship of A. B. S].
dc.description.sponsorshipThis work was supported by TUBITAK-TBAG 110T058; Istanbul University BAP project 3032; TUBITAK-BIDEP 2211 [PhD fellowship of A. B. S].
dc.description.studentonlypublicationNo
dc.description.studentpublicationYes
dc.description.versionN/A
dc.identifier.WoSQuartileQ1
dc.identifier.doi10.1093/pcp/pcu078
dc.identifier.eissn1471-9053
dc.identifier.embargoN/A
dc.identifier.endpage1483
dc.identifier.grantno110T058
dc.identifier.issn0032-0781
dc.identifier.issue8
dc.identifier.pubmed24891561
dc.identifier.scopus2-s2.0-84906069465
dc.identifier.startpage1473
dc.identifier.urihttps://doi.org/10.1093/pcp/pcu078
dc.identifier.urihttps://hdl.handle.net/20.500.14288/7353
dc.identifier.volume55
dc.identifier.wos000342978000010
dc.keywordsADP-glucose pyrophosphorylase
dc.keywordsAllosteric regulation
dc.keywordsIn vitro mutagenesis
dc.keywordsProtein assembly
dc.keywordsSubunit interactions
dc.keywordsStarch biosynthesis
dc.keywordsHeat-stability
dc.keywordsAllosteric properties
dc.keywordsSolanum-tuberosum
dc.keywordsBinding-sites
dc.keywordsGeneration
dc.keywordsEnzyme
dc.keywordsLeaf
dc.language.isoeng
dc.publisherOxford University Press
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofPlant and Cell Physiology
dc.relation.openaccessN/A
dc.rightsN/A
dc.subjectPlant yield improvement biotechnology
dc.subjectCell biology
dc.subjectMutagenesis starch enzyme
dc.subjectStarch biosynthesis
dc.subjectPlant starch biosynthesis
dc.titleEnhanced heterotetrameric assembly of potato ADP-Glucose pyrophosphorylase using reverse genetics
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.kuauthorSeferoğlu, Ayşe Bengisu
local.contributor.kuauthorKoper, Kaan
local.contributor.kuauthorCan, Fatma Betül
local.contributor.kuauthorKavaklı, İbrahim Halil
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