Publication:
Enhanced heterotetrameric assembly of potato ADP-Glucose pyrophosphorylase using reverse genetics

dc.contributor.coauthorCevahir, Gül
dc.contributor.departmentDepartment of Molecular Biology and Genetics
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.kuauthorCan, Fatma Betül
dc.contributor.kuauthorKavaklı, İbrahim Halil
dc.contributor.kuauthorKoper, Kaan
dc.contributor.kuauthorSeferoğlu, Ayşe Bengisu
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.date.accessioned2024-11-09T22:56:17Z
dc.date.issued2014
dc.description.abstractADP-glucose pyrophosphorylase (AGPase) is a key allosteric enzyme in plant starch biosynthesis. Plant AGPase is a heterotetrameric enzyme that consists of large (LS) and small subunits (SS), which are encoded by two different genes. Computational and experimental studies have revealed that the heterotetrameric assembly of AGPase is thermodynamically weak. Modeling studies followed by the mutagenesis of the LS of the potato AGPase identified a heterotetramer-deficient mutant, LSR88A. To enhance heterotetrameric assembly, LSR88A cDNA was subjected to error-prone PCR, and second-site revertants were identified according to their ability to restore glycogen accumulation, as assessed with iodine staining. Selected mutations were introduced into the wild-type (WT) LS and co-expressed with the WT SS in Escherichia coli glgC(-). The biochemical characterization of revertants revealed that (LSSSWT)-S-I90V, (LSSSWT)-S-Y378C and (LSSSWT)-S-D410G mutants displayed enhanced heterotetrameric assembly with the WT SS. Among these mutants, (LSSSWT)-S-Y378C AGPase displayed increased heat stability compared with the WT enzyme. Kinetic characterization of the mutants indicated that the (LSSSWT)-S-I90V and (LSSSWT)-S-Y378C AGPases have comparable allosteric and kinetic properties. However, the (LSSSWT)-S-D410G mutant exhibited altered allosteric properties of being less responsive and more sensitive to 3-phosphoglyceric acid activation and inorganic phosphate inhibition. This study not only enhances our understanding of the interaction between the SS and the LS of AGPase but also enables protein engineering to obtain enhanced assembled heat-stable variants of AGPase, which can be used for the improvement of plant yields.
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.issue8
dc.description.openaccessYES
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuN/A
dc.description.sponsorshipTUBITAK-TBAG [110T058]
dc.description.sponsorshipIstanbul University BAP project [3032]
dc.description.sponsorshipTUBITAK-BIDEP [2211] This work was supported by TUBITAK-TBAG 110T058
dc.description.sponsorshipIstanbul University BAP project 3032
dc.description.sponsorshipTUBITAK-BIDEP 2211 [PhD fellowship of A. B. S].
dc.description.volume55
dc.identifier.doi10.1093/pcp/pcu078
dc.identifier.eissn1471-9053
dc.identifier.issn0032-0781
dc.identifier.quartileQ1
dc.identifier.scopus2-s2.0-84906069465
dc.identifier.urihttps://doi.org/10.1093/pcp/pcu078
dc.identifier.urihttps://hdl.handle.net/20.500.14288/7353
dc.identifier.wos342978000010
dc.keywordsADP-glucose pyrophosphorylase
dc.keywordsAllosteric regulation
dc.keywordsIn vitro mutagenesis
dc.keywordsProtein assembly
dc.keywordsSubunit interactions
dc.keywordsStarch biosynthesis
dc.keywordsHeat-stability
dc.keywordsAllosteric properties
dc.keywordsSolanum-tuberosum
dc.keywordsBinding-sites
dc.keywordsGeneration
dc.keywordsEnzyme
dc.keywordsLeaf
dc.language.isoeng
dc.publisherOxford Univ Press
dc.relation.ispartofPlant and Cell Physiology
dc.subjectPlant science
dc.subjectCell biology
dc.titleEnhanced heterotetrameric assembly of potato ADP-Glucose pyrophosphorylase using reverse genetics
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.kuauthorSeferoğlu, Ayşe Bengisu
local.contributor.kuauthorKoper, Kaan
local.contributor.kuauthorCan, Fatma Betül
local.contributor.kuauthorKavaklı, İbrahim Halil
local.publication.orgunit1GRADUATE SCHOOL OF SCIENCES AND ENGINEERING
local.publication.orgunit1College of Sciences
local.publication.orgunit1College of Engineering
local.publication.orgunit2Department of Molecular Biology and Genetics
local.publication.orgunit2Department of Chemical and Biological Engineering
local.publication.orgunit2Graduate School of Sciences and Engineering
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