Publication: Enhanced heterotetrameric assembly of potato ADP-Glucose pyrophosphorylase using reverse genetics
dc.contributor.coauthor | Cevahir, Gül | |
dc.contributor.department | Department of Molecular Biology and Genetics | |
dc.contributor.department | Department of Chemical and Biological Engineering | |
dc.contributor.department | Graduate School of Sciences and Engineering | |
dc.contributor.kuauthor | Can, Fatma Betül | |
dc.contributor.kuauthor | Kavaklı, İbrahim Halil | |
dc.contributor.kuauthor | Koper, Kaan | |
dc.contributor.kuauthor | Seferoğlu, Ayşe Bengisu | |
dc.contributor.schoolcollegeinstitute | College of Engineering | |
dc.contributor.schoolcollegeinstitute | College of Sciences | |
dc.contributor.schoolcollegeinstitute | GRADUATE SCHOOL OF SCIENCES AND ENGINEERING | |
dc.date.accessioned | 2024-11-09T22:56:17Z | |
dc.date.issued | 2014 | |
dc.description.abstract | ADP-glucose pyrophosphorylase (AGPase) is a key allosteric enzyme in plant starch biosynthesis. Plant AGPase is a heterotetrameric enzyme that consists of large (LS) and small subunits (SS), which are encoded by two different genes. Computational and experimental studies have revealed that the heterotetrameric assembly of AGPase is thermodynamically weak. Modeling studies followed by the mutagenesis of the LS of the potato AGPase identified a heterotetramer-deficient mutant, LSR88A. To enhance heterotetrameric assembly, LSR88A cDNA was subjected to error-prone PCR, and second-site revertants were identified according to their ability to restore glycogen accumulation, as assessed with iodine staining. Selected mutations were introduced into the wild-type (WT) LS and co-expressed with the WT SS in Escherichia coli glgC(-). The biochemical characterization of revertants revealed that (LSSSWT)-S-I90V, (LSSSWT)-S-Y378C and (LSSSWT)-S-D410G mutants displayed enhanced heterotetrameric assembly with the WT SS. Among these mutants, (LSSSWT)-S-Y378C AGPase displayed increased heat stability compared with the WT enzyme. Kinetic characterization of the mutants indicated that the (LSSSWT)-S-I90V and (LSSSWT)-S-Y378C AGPases have comparable allosteric and kinetic properties. However, the (LSSSWT)-S-D410G mutant exhibited altered allosteric properties of being less responsive and more sensitive to 3-phosphoglyceric acid activation and inorganic phosphate inhibition. This study not only enhances our understanding of the interaction between the SS and the LS of AGPase but also enables protein engineering to obtain enhanced assembled heat-stable variants of AGPase, which can be used for the improvement of plant yields. | |
dc.description.indexedby | WOS | |
dc.description.indexedby | Scopus | |
dc.description.indexedby | PubMed | |
dc.description.issue | 8 | |
dc.description.openaccess | YES | |
dc.description.publisherscope | International | |
dc.description.sponsoredbyTubitakEu | N/A | |
dc.description.sponsorship | TUBITAK-TBAG [110T058] | |
dc.description.sponsorship | Istanbul University BAP project [3032] | |
dc.description.sponsorship | TUBITAK-BIDEP [2211] This work was supported by TUBITAK-TBAG 110T058 | |
dc.description.sponsorship | Istanbul University BAP project 3032 | |
dc.description.sponsorship | TUBITAK-BIDEP 2211 [PhD fellowship of A. B. S]. | |
dc.description.volume | 55 | |
dc.identifier.doi | 10.1093/pcp/pcu078 | |
dc.identifier.eissn | 1471-9053 | |
dc.identifier.issn | 0032-0781 | |
dc.identifier.quartile | Q1 | |
dc.identifier.scopus | 2-s2.0-84906069465 | |
dc.identifier.uri | https://doi.org/10.1093/pcp/pcu078 | |
dc.identifier.uri | https://hdl.handle.net/20.500.14288/7353 | |
dc.identifier.wos | 342978000010 | |
dc.keywords | ADP-glucose pyrophosphorylase | |
dc.keywords | Allosteric regulation | |
dc.keywords | In vitro mutagenesis | |
dc.keywords | Protein assembly | |
dc.keywords | Subunit interactions | |
dc.keywords | Starch biosynthesis | |
dc.keywords | Heat-stability | |
dc.keywords | Allosteric properties | |
dc.keywords | Solanum-tuberosum | |
dc.keywords | Binding-sites | |
dc.keywords | Generation | |
dc.keywords | Enzyme | |
dc.keywords | Leaf | |
dc.language.iso | eng | |
dc.publisher | Oxford Univ Press | |
dc.relation.ispartof | Plant and Cell Physiology | |
dc.subject | Plant science | |
dc.subject | Cell biology | |
dc.title | Enhanced heterotetrameric assembly of potato ADP-Glucose pyrophosphorylase using reverse genetics | |
dc.type | Journal Article | |
dspace.entity.type | Publication | |
local.contributor.kuauthor | Seferoğlu, Ayşe Bengisu | |
local.contributor.kuauthor | Koper, Kaan | |
local.contributor.kuauthor | Can, Fatma Betül | |
local.contributor.kuauthor | Kavaklı, İbrahim Halil | |
local.publication.orgunit1 | GRADUATE SCHOOL OF SCIENCES AND ENGINEERING | |
local.publication.orgunit1 | College of Sciences | |
local.publication.orgunit1 | College of Engineering | |
local.publication.orgunit2 | Department of Molecular Biology and Genetics | |
local.publication.orgunit2 | Department of Chemical and Biological Engineering | |
local.publication.orgunit2 | Graduate School of Sciences and Engineering | |
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