Publication:
Transient proteinprotein interactions

dc.contributor.departmentDepartment of Computer Engineering
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.departmentCCBB (The Center for Computational Biology and Bioinformatics)
dc.contributor.facultymemberYes
dc.contributor.kuauthorEngin, Hatice Billur
dc.contributor.kuauthorGürsoy, Attila
dc.contributor.kuauthorKeskin, Özlem
dc.contributor.kuauthorÖzbabacan, Saliha Ece Acuner
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.schoolcollegeinstituteResearch Center
dc.date.accessioned2024-11-10T00:04:39Z
dc.date.issued2011
dc.description.abstractTransient complexes are crucial for diverse biological processes such as biochemical pathways and signaling cascades in the cell. Here, we give an overview of the transient interactions; the importance of transient interactions as drug targets; and the structural characterization of transient proteinprotein complexes based on the geometrical and physicochemical features of the transient complexes' interfaces. To better understand and eventually design transient proteinprotein interactions (TPPIs), a molecular perspective of the proteinprotein interfaces is necessary. Obtaining high-quality structures of proteinprotein interactions could be one way of achieving this goal. After introducing the association kinetics of TPPIs, we elaborate on the experimental techniques detecting TPPIs in combination with the computational methods which classify transient and/or non-obligate complexes. In this review, currently available databases and servers that can be used to identify and predict TPPIs are also compiled.
dc.description.fulltextNo
dc.description.harvestedfromManual
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.openaccessYES
dc.description.peerreviewstatusN/A
dc.description.publisherscopeInternational
dc.description.readpublishN/A
dc.description.sponsoredbyTubitakEuTÜBİTAK
dc.description.sponsorshipScientific and Technological Research Council of Turkey [109T343, 109E207]
dc.description.sponsorshipTurkish Academy of Sciences (TUBA) This work was supported by the Scientific and Technological Research Council of Turkey Fellowship (Grant Numbers 109T343 and 109E207 to S.E.A.O. and H. B. E.) and Turkish Academy of Sciences (TUBA).
dc.description.studentonlypublicationNo
dc.description.studentpublicationYes
dc.description.versionN/A
dc.identifier.WoSQuartileQ2
dc.identifier.doi10.1093/protein/gzr025
dc.identifier.eissn1741-0134
dc.identifier.embargoN/A
dc.identifier.endpage648
dc.identifier.grantno109T343
dc.identifier.grantno109E207
dc.identifier.issn1741-0126
dc.identifier.issue9
dc.identifier.pubmed21676899
dc.identifier.scopus2-s2.0-80052326913
dc.identifier.startpage635
dc.identifier.urihttps://doi.org/10.1093/protein/gzr025
dc.identifier.urihttps://hdl.handle.net/20.500.14288/16308
dc.identifier.volume24
dc.identifier.wos000294555600004
dc.keywordsProtein interface
dc.keywordsProtein interaction types
dc.keywordsTransient protein
dc.keywordsProtein interactions
dc.keywordsTransient proteindrug Interactions
dc.keywordsBimolecular
dc.keywordsFluorescence complementation
dc.keywordsMagnetic-resonance-spectroscopy
dc.keywordsMolecular interaction database
dc.keywordsInteraction network database
dc.keywordsNucleotide-exchange Factor
dc.keywordsSurface-plasmon resonance
dc.keywordsTransfer fret microscopy
dc.keywordsDrug discovery
dc.keywordsMass-spectrometry
dc.keywordsLiving cells
dc.language.isoeng
dc.publisherOxford Univ Press
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofProtein Engineering Design & Selection
dc.relation.openaccessN/A
dc.rightsN/A
dc.subjectProtein interaction networks
dc.subjectBiomolecular interactions
dc.subjectComputational biology
dc.titleTransient proteinprotein interactions
dc.typeReview
dspace.entity.typePublication
local.contributor.kuauthorÖzbabacan, Saliha Ece Acuner
local.contributor.kuauthorEngin, Hatice Billur
local.contributor.kuauthorGürsoy, Attila
local.contributor.kuauthorKeskin, Özlem
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