Publication: End-to-end mathematical modeling of stress communication between plants
| dc.contributor.department | Department of Electrical and Electronics Engineering | |
| dc.contributor.kuauthor | Kılıç, Ahmet Burak | |
| dc.contributor.kuauthor | Akan, Özgür Barış | |
| dc.contributor.schoolcollegeinstitute | College of Engineering | |
| dc.date.accessioned | 2026-02-26T07:11:43Z | |
| dc.date.available | 2026-02-25 | |
| dc.date.issued | 2026 | |
| dc.description.abstract | Molecular Communication (MC) is a fundamental communication paradigm observed in nature. A notable subtype, Odor-based Molecular Communication (OMC), offers promising potential and a wide range of applications. In this study, we investigate OMC between plants in the context of stress communication, focusing on how plants emit Biological Volatile Organic Compounds (BVOCs) to convey information about experienced stress to neighboring plants. We present an end-to-end mathematical model that captures the physical and biological processes involved in plant-to-plant stress signaling. To the best of our knowledge, this is the first study to model stress communication in plants from transmission to reception. The system is analyzed numerically under various scenarios using MATLAB. Using experimental data from the literature, we show that BVOC emissions under different stress conditions can be approximated through a continuous gene regulation model. This model is applied to multiple stressors and plant species to simulate emission dynamics accurately. Additionally, we examine a modulation strategy observed in plants, known as Ratio Shift Keying, which enables the encoding of information in the relative concentrations of different BVOCs. This method limits the ability of competing plants to extract the transmitted information. | |
| dc.description.fulltext | No | |
| dc.description.harvestedfrom | Manual | |
| dc.description.indexedby | WOS | |
| dc.description.indexedby | Scopus | |
| dc.description.openaccess | N/A | |
| dc.description.peerreviewstatus | N/A | |
| dc.description.publisherscope | International | |
| dc.description.readpublish | N/A | |
| dc.description.sponsoredbyTubitakEu | N/A | |
| dc.description.sponsorship | This work was supported in part by the AXA Research Fund (AXA Chair for Internet of Everything at KocUniversity). The associate editor coordinating the review of this article and approving it for publication was Y. Chen. | |
| dc.description.version | N/A | |
| dc.identifier.doi | 10.1109/TMBMC.2025.3626218 | |
| dc.identifier.eissn | 2332-7804 | |
| dc.identifier.embargo | No | |
| dc.identifier.endpage | 78 | |
| dc.identifier.quartile | Q3 | |
| dc.identifier.scopus | 2-s2.0-105020274868 | |
| dc.identifier.startpage | 69 | |
| dc.identifier.uri | https://doi.org/10.1109/TMBMC.2025.3626218 | |
| dc.identifier.uri | https://hdl.handle.net/20.500.14288/32423 | |
| dc.identifier.volume | 12 | |
| dc.identifier.wos | 001660766100002 | |
| dc.keywords | Stress | |
| dc.keywords | Transmitters | |
| dc.keywords | Mathematical models | |
| dc.keywords | Production | |
| dc.keywords | Molecular communication | |
| dc.keywords | Plants (biology) | |
| dc.keywords | Biological system modeling | |
| dc.keywords | Receivers | |
| dc.keywords | Volatile organic compounds | |
| dc.keywords | Regulators | |
| dc.keywords | Stress communication | |
| dc.keywords | Plant communication | |
| dc.keywords | Biological volatile organic compounds (BVOC) | |
| dc.keywords | Olfactory communication | |
| dc.keywords | Molecular communication | |
| dc.keywords | Ratio shift keying (RSK) | |
| dc.keywords | Concentration shift keying (CSK) | |
| dc.language.iso | eng | |
| dc.publisher | IEEE | |
| dc.relation.affiliation | Koç University | |
| dc.relation.collection | Koç University Institutional Repository | |
| dc.relation.ispartof | IEEE Transactions on Molecular, Biological, and Multi-Scale Communications | |
| dc.relation.openaccess | No | |
| dc.rights | Copyrighted | |
| dc.subject | Engineering | |
| dc.subject | Telecommunications | |
| dc.title | End-to-end mathematical modeling of stress communication between plants | |
| dc.type | Journal Article | |
| dspace.entity.type | Publication | |
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