Publication:
Detection in molecular communications with ligand receptors under molecular interference

dc.contributor.departmentDepartment of Electrical and Electronics Engineering
dc.contributor.kuauthorAkan, Özgür Barış
dc.contributor.kuauthorKuşcu, Murat
dc.contributor.kuprofileFaculty Member
dc.contributor.otherDepartment of Electrical and Electronics Engineering
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.yokid6647
dc.contributor.yokid316349
dc.date.accessioned2024-11-09T13:22:18Z
dc.date.issued2021
dc.description.abstractMolecular Communications (MC) is a bio-inspired communication technique that uses molecules to transfer information among bio-nano devices. In this paper, we focus on the detection problem for biological MC receivers employing ligand receptors to infer the transmitted messages encoded into the concentration of molecules, i.e., ligands. In practice, receptors are not ideally selective against target ligands, and in physiological environments, they can interact with multiple types of ligands at different reaction rates depending on their binding affinity. This molecular cross-talk can cause a substantial interference on MC. Here we consider a particular scenario, where there is non-negligible concentration of interferer molecules in the channel, which have similar receptor-binding characteristics with the information molecules, and the receiver employs single type of receptors. We investigate the performance of four different detection methods, which make use of different statistics of the ligand-receptor binding reactions: instantaneous number of bound receptors, unbound time durations of receptors, bound time durations of receptors, and combination of unbound and bound time durations of receptors within a sampling time interval. The performances of the introduced detection methods are evaluated in terms of bit error probability for varying strength of molecular interference, similarity between information and interferer molecules, number of receptors, and received concentration difference between bit-0 and bit-1 transmissions. We propose synthetic receptor designs that can convert the required receptor statistics to the concentration of intracellular molecules, and chemical reaction networks that can chemically perform the computations required for detection.
dc.description.fulltextYES
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.openaccessYES
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuEU
dc.description.sponsorshipEuropean Union (EU)
dc.description.sponsorshipHorizon 2020
dc.description.sponsorshipEuropean Research Council (ERC)
dc.description.sponsorshipProject MINERVA
dc.description.sponsorshipERC-2013-CoG
dc.description.sponsorshipAXA Research Fund
dc.description.versionAuthor's final manuscript
dc.description.volume124
dc.formatpdf
dc.identifier.doi10.1016/j.dsp.2021.103186
dc.identifier.embargoNO
dc.identifier.filenameinventorynoIR03241
dc.identifier.issn1051-2004
dc.identifier.linkhttps://doi.org/10.1016/j.dsp.2021.103186
dc.identifier.quartileQ2
dc.identifier.scopus2-s2.0-85111954067
dc.identifier.urihttps://hdl.handle.net/20.500.14288/3316
dc.identifier.wos795904700006
dc.keywordsChemical reaction networks
dc.keywordsDetection
dc.keywordsInterference
dc.keywordsKinetic proofreading
dc.keywordsLigand receptors
dc.keywordsMolecular communication
dc.languageEnglish
dc.publisherElsevier
dc.relation.grantno616922
dc.relation.urihttp://cdm21054.contentdm.oclc.org/cdm/ref/collection/IR/id/10026
dc.sourceDigital Signal Processing
dc.subjectEngineering
dc.subjectMolecular communications
dc.titleDetection in molecular communications with ligand receptors under molecular interference
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.authorid0000-0003-2523-3858
local.contributor.authorid0000-0002-8463-6027
local.contributor.kuauthorAkan, Özgür Barış
local.contributor.kuauthorKuşcu, Murat
relation.isOrgUnitOfPublication21598063-a7c5-420d-91ba-0cc9b2db0ea0
relation.isOrgUnitOfPublication.latestForDiscovery21598063-a7c5-420d-91ba-0cc9b2db0ea0

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