Publication:
Bayesian machine learning optimization of microneedle design for biological fluid sampling

dc.contributor.coauthorYetişen, Ali K.
dc.contributor.departmentKUAR (KU Arçelik Research Center for Creative Industries)
dc.contributor.departmentKUIS AI (Koç University & İş Bank Artificial Intelligence Center)
dc.contributor.departmentKUTTAM (Koç University Research Center for Translational Medicine)
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.departmentDepartment of Mechanical Engineering
dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.kuauthorAydın, Erdal
dc.contributor.kuauthorTarar, Ceren
dc.contributor.kuauthorTaşoğlu, Savaş
dc.contributor.schoolcollegeinstituteResearch Center
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.date.accessioned2024-12-29T09:39:48Z
dc.date.issued2023
dc.description.abstractThe deployment of microneedles in biological fluid sampling and drug delivery is an emerging field in biotechnology, which contributes greatly to minimally-invasive methods in medicine. Prior studies on microneedles proposed designs based on the optimization of physical parameters through trial-and-error method. While these methods showed adequate results, it is possible to enhance the performance of a microneedle using a large dataset of parameters and their respective performance using advanced data analysis methods. Machine Learning (ML) offers the ability to mimic human learning behavior to expedite decision-making processes in biotechnology. In this study, the finite element analysis and ML models are combined to determine the optimal physical parameters for a microneedle design to maximize the amount of collected biological fluid. The fluid behavior in a microneedle patch is modeled using COMSOL Multiphysics (R), and the model is simulated with a set of initial physical and geometrical parameters in MATLAB (R) using LiveLink (TM). The mathematical model is used as the input to MATLAB's Bayesian Optimization function (bayesopt) and optimized for the maximum volumetric flow rate with pre-defined number of iterations. Within the parameter bounds, maximum volumetric flow rate is determined to be 21.16 mL min-1, which is 60% higher with respect to a system, where geometrical parameters are chosen randomly on average. This study introduces an online method for designing microneedles, where user can define the upper and lower bounds of the parameters to obtain an optimal design. The deployment of microneedles in biological fluid sampling and drug delivery is an emerging field in biotechnology, which contributes greatly to minimally-invasive methods in medicine.
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.issue4
dc.description.openaccessGold Open Access
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuTÜBİTAK
dc.description.sponsorshipST acknowledges TUBITAK 2232 International Fellowship for Outstanding Researchers Award (118C391), Alexander von Humboldt Research Fellowship for Experienced Researchers, Marie Sklodowska-Curie Individual Fellowship (101003361), and Royal Academy Newton-Katip Celebi Transforming Systems Through Partnership award for financial support of this research. Opinions, interpretations, conclusions, and recommendations are those of the author and are not necessarily endorsed by the TUEB & Idot;TAK. This work was partially supported by Science Academy's Young Scientist Awards Program (BAGEP), Outstanding Young Scientists Awards (GEBIP), and Bilim Kahramanlari Dernegi The Young Scientist Award. The authors have no other relevant affiliations or financial involvement with any organization or entity with a financial interest in or financial conflict with the subject matter or materials discussed in the manuscript apart from those disclosed. Some elements in Fig. 1 were designed using resources https://flaticon.com.
dc.description.volume2
dc.identifier.doi10.1039/d3sd00103b
dc.identifier.eissn2635-0998
dc.identifier.quartileQ2
dc.identifier.scopus2-s2.0-85169309119
dc.identifier.urihttps://doi.org/10.1039/d3sd00103b
dc.identifier.urihttps://hdl.handle.net/20.500.14288/23106
dc.identifier.wos1127544000001
dc.keywordsTransdermal
dc.keywordsMicroneedle
dc.keywordsDrug delivery system
dc.language.isoeng
dc.publisherRoyal Soc Chemistry
dc.relation.grantnoTUBITAK 2232 International Fellowship for Outstanding Researchers Award [118C391]
dc.relation.grantnoAlexander von Humboldt Research Fellowship for Experienced Researchers, Marie Sklodowska-Curie Individual Fellowship [101003361]
dc.relation.grantnoRoyal Academy Newton-Katip Celebi Transforming Systems Through Partnership award
dc.relation.grantnoScience Academy
dc.relation.ispartofSensors and Diagnostics
dc.subjectAnalytical chemistry
dc.titleBayesian machine learning optimization of microneedle design for biological fluid sampling
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.kuauthorTarar, Ceren
local.contributor.kuauthorAydın, Erdal
local.contributor.kuauthorTaşoğlu, Savaş
local.publication.orgunit1GRADUATE SCHOOL OF SCIENCES AND ENGINEERING
local.publication.orgunit1Research Center
local.publication.orgunit2KUAR (KU Arçelik Research Center for Creative Industries)
local.publication.orgunit2Graduate School of Sciences and Engineering
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