Publication:
Cellular and immune landscape of chronic liver diseases: insights from immunophenotyping

dc.contributor.coauthorYang, H.
dc.contributor.coauthorMardinoglu, A.
dc.contributor.coauthorDayangac, M.
dc.contributor.departmentSchool of Medicine
dc.contributor.departmentKUTTAM (Koç University Research Center for Translational Medicine)
dc.contributor.kuauthorSoleimani, Shaghayegh
dc.contributor.kuauthorAlbayrak, Özgür
dc.contributor.kuauthorSomay, Kayra
dc.contributor.kuauthorYiğit Alpdoğan, Buket
dc.contributor.kuauthorUlukan, Bürge
dc.contributor.kuauthorAtak, Dila
dc.contributor.kuauthorAkyıldız, Murat
dc.contributor.kuauthorGürsoy, Metehan
dc.contributor.kuauthorDemirtaş, Elif
dc.contributor.kuauthorVural, Atay
dc.contributor.kuauthorZeybel, Müjdat
dc.contributor.schoolcollegeinstituteSCHOOL OF MEDICINE
dc.contributor.schoolcollegeinstituteResearch Center
dc.date.accessioned2026-08-14T11:20:39Z
dc.date.issued2025
dc.description.abstractChronic liver disease due to alcohol-related liver disease and chronic viral hepatitis pose a substantial burden on healthcare systems. Chronic liver disease may predispose to hepatocellular carcinoma, for which therapeutic options are limited. This study aimed to explore the immune cell characteristics of the clinical conditions.MethodsExplant liver samples were collected from 25 patients for bulk RNA sequencing and flow cytometry analysis. Immune cell populations were characterized by flow cytometry from isolated hepatic and peripheral mononuclear cells.ResultsSignificant differences in immune cell characteristics were observed among patients with three clinical conditions. Viral hepatitis and peri-tumor samples exhibited higher hepatic B cell counts compared to alcohol-related liver disease. Additionally, chronic liver disease patients showed higher levels of CD57+ T cells, suggestive of T cell differentiation. Differential expression analysis identified several genes associated with immune regulation, including downregulation of CD27 and upregulation of granzyme B in ARLD, consistent with a highly differentiated phenotype. LAG3 and PDCD1 were upregulated in peri-tumor samples. The NK cell count was lower in peri-tumor liver specimens compared to ARLD, and an upregulation of TIGIT, an inhibitory marker, was observed in those peri-tumor specimens.ConclusionThis study contributes to the understanding of immune dynamics in chronic liver disease among different etiologies. B lymphocytes are relatively reduced in alcohol-related liver disease compared to other groups, and T cells exhibit a more differentiated subtype. The peritumor microenvironment in HCC suggests a relatively diminished presence of NK cells and a potential tendency toward increased inhibitory characteristics.
dc.description.harvestedfromManual
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.publisherscopeInternational
dc.description.readpublishN/A
dc.description.sponsoredbyTubitakEuN/A
dc.description.sponsorshipThe authors gratefully acknowledge use of the services and facilities of the Koc University Research Center for Translational Medicine (KUTTAM), funded by the Republic of Turkey Ministry of Development.
dc.description.versionPublished Version
dc.identifier.ScopusPercentile90
dc.identifier.ScopusQuartileQ1
dc.identifier.WoSPercentile65,1
dc.identifier.WoSQuartileQ2
dc.identifier.doi10.3389/fmolb.2024.1521811
dc.identifier.embargoN/A
dc.identifier.issn2296-889X
dc.identifier.pubmed39944754
dc.identifier.scopus2-s2.0-85217845140
dc.identifier.urihttp://doi.org/10.3389/fmolb.2024.1521811
dc.identifier.urihttps://hdl.handle.net/20.500.14288/34327
dc.identifier.volume11
dc.identifier.wos001417721000001
dc.keywordsImmune system
dc.keywordsImmunophenotyping
dc.keywordsChronic liver disease
dc.keywordsDownregulation and upregulation
dc.keywordsHepatocellular carcinoma
dc.keywordsTIGIT
dc.keywordsLiver disease
dc.keywordsFlow cytometry
dc.keywordsImmunology
dc.keywordsHepatic stellate cell
dc.keywordsBiology
dc.keywordsAlcoholic liver disease
dc.keywordsGranzyme b
dc.keywordsMedicine
dc.keywordsCancer research
dc.keywordsT cell
dc.keywordsPathology
dc.keywordsCirrhosis
dc.keywordsInternal medicine
dc.languageeng
dc.publisherFrontiers Media SA
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofFrontiers in Molecular Biosciences
dc.relation.openaccessN/A
dc.rightsN/A
dc.rights.uriN/A
dc.subjectHealth sciences
dc.subjectMedicine
dc.subjectMolecular biology
dc.subjectBiochemistry
dc.titleCellular and immune landscape of chronic liver diseases: insights from immunophenotyping
dc.typeJournal Article
dspace.entity.typePublication
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