Publication:
Modeling adsorption, conformation, and orientation of the Fis1 tail anchor at the mitochondrial outer membrane

dc.contributor.coauthorDunn, Cory D.
dc.contributor.departmentDepartment of Mechanical Engineering
dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.kuauthorÖzgür, Beytullah
dc.contributor.kuauthorSayar, Mehmet
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.date.accessioned2024-11-09T23:59:30Z
dc.date.issued2022
dc.description.abstractProteins can be targeted to organellar membranes by using a tail anchor (TA), a stretch of hydrophobic amino acids found at the polypeptide carboxyl-terminus. The Fis1 protein (Fis1p), which promotes mitochondrial and peroxisomal division in the yeast Saccharomyces cerevisiae, is targeted to those organelles by its TA. Substantial evidence suggests that Fis1p insertion into the mitochondrial outer membrane can occur without the need for a translocation machinery. However, recent findings raise the possibility that Fis1p insertion into mitochondria might be promoted by a proteinaceous complex. Here, we have performed atomistic and coarse-grained molecular dynamics simulations to analyze the adsorption, conformation, and orientation of the Fis1(TA). Our results support stable insertion at the mitochondrial outer membrane in a monotopic, rather than a bitopic (transmembrane), configuration. Once inserted in the monotopic orientation, unassisted transition to the bitopic orientation is expected to be blocked by the highly charged nature of the TA carboxyl-terminus and by the Fis1p cytosolic domain. Our results are consistent with a model in which Fis1p does not require a translocation machinery for insertion at mitochondria.
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.issue8
dc.description.openaccessYES
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuN/A
dc.description.sponsorshipTUBITAK[120Z706]
dc.description.sponsorshipSigrid Juselius Foundation
dc.description.sponsorshipAcademy of Finland [331556]
dc.description.sponsorshipJane and Aatos Erkko Foundation
dc.description.sponsorshipAcademy of Finland (AKA) [331556] Funding Source: Academy of Finland (AKA) M.S. gratefully acknowledges funding from TUB.ITAK (grant no. 120Z706). C.D.D. gratefully acknowledges funding from the Sigrid Juselius Foundation, the Academy of Finland (project 331556), and the Jane and Aatos Erkko Foundation. C.D.D. and M.S. appreciate the excellent computational support from the TUBITAKULAKBIM High Performance and Grid Computing Center (TRUBA resources) and from the Center for Scientific Computing, Finland (Puhti supercomputer).
dc.description.volume12
dc.identifier.doi10.3390/membranes12080752
dc.identifier.eissn2077-0375
dc.identifier.quartileQ2
dc.identifier.scopus2-s2.0-85137360333
dc.identifier.urihttps://doi.org/10.3390/membranes12080752
dc.identifier.urihttps://hdl.handle.net/20.500.14288/15651
dc.identifier.wos846548800001
dc.keywordsPeptide conformation
dc.keywordsMitochondria
dc.keywordsMitochondrial outer membrane
dc.keywordsTail anchor
dc.keywordsMolecular dynamics
dc.keywordsLipid membrane
dc.keywordsWd repeat protein
dc.keywordsMolecular-dynamics
dc.keywordsForce-field
dc.keywordsHigh-resolution
dc.keywordsInsertion
dc.keywordsFission
dc.keywordsDnm1p
dc.keywordsMdv1p
dc.keywordsBiogenesis
dc.keywordsGtpase
dc.language.isoeng
dc.publisherMDPI
dc.relation.ispartofMembranes
dc.subjectBiochemistry
dc.subjectMolecular biology
dc.subjectChemistry
dc.subjectPhysical chemistry
dc.subjectEngineering
dc.subjectChemical engineering
dc.subjectMaterials science
dc.subjectPolymer science
dc.titleModeling adsorption, conformation, and orientation of the Fis1 tail anchor at the mitochondrial outer membrane
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.kuauthorÖzgür, Beytullah
local.contributor.kuauthorSayar, Mehmet
local.publication.orgunit1GRADUATE SCHOOL OF SCIENCES AND ENGINEERING
local.publication.orgunit1College of Engineering
local.publication.orgunit2Department of Mechanical Engineering
local.publication.orgunit2Graduate School of Sciences and Engineering
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