Publication: Modeling adsorption, conformation, and orientation of the Fis1 tail anchor at the mitochondrial outer membrane
dc.contributor.coauthor | Dunn, Cory D. | |
dc.contributor.department | Department of Mechanical Engineering | |
dc.contributor.department | Graduate School of Sciences and Engineering | |
dc.contributor.kuauthor | Özgür, Beytullah | |
dc.contributor.kuauthor | Sayar, Mehmet | |
dc.contributor.schoolcollegeinstitute | College of Engineering | |
dc.contributor.schoolcollegeinstitute | GRADUATE SCHOOL OF SCIENCES AND ENGINEERING | |
dc.date.accessioned | 2024-11-09T23:59:30Z | |
dc.date.issued | 2022 | |
dc.description.abstract | Proteins can be targeted to organellar membranes by using a tail anchor (TA), a stretch of hydrophobic amino acids found at the polypeptide carboxyl-terminus. The Fis1 protein (Fis1p), which promotes mitochondrial and peroxisomal division in the yeast Saccharomyces cerevisiae, is targeted to those organelles by its TA. Substantial evidence suggests that Fis1p insertion into the mitochondrial outer membrane can occur without the need for a translocation machinery. However, recent findings raise the possibility that Fis1p insertion into mitochondria might be promoted by a proteinaceous complex. Here, we have performed atomistic and coarse-grained molecular dynamics simulations to analyze the adsorption, conformation, and orientation of the Fis1(TA). Our results support stable insertion at the mitochondrial outer membrane in a monotopic, rather than a bitopic (transmembrane), configuration. Once inserted in the monotopic orientation, unassisted transition to the bitopic orientation is expected to be blocked by the highly charged nature of the TA carboxyl-terminus and by the Fis1p cytosolic domain. Our results are consistent with a model in which Fis1p does not require a translocation machinery for insertion at mitochondria. | |
dc.description.indexedby | WOS | |
dc.description.indexedby | Scopus | |
dc.description.indexedby | PubMed | |
dc.description.issue | 8 | |
dc.description.openaccess | YES | |
dc.description.publisherscope | International | |
dc.description.sponsoredbyTubitakEu | N/A | |
dc.description.sponsorship | TUBITAK[120Z706] | |
dc.description.sponsorship | Sigrid Juselius Foundation | |
dc.description.sponsorship | Academy of Finland [331556] | |
dc.description.sponsorship | Jane and Aatos Erkko Foundation | |
dc.description.sponsorship | Academy of Finland (AKA) [331556] Funding Source: Academy of Finland (AKA) M.S. gratefully acknowledges funding from TUB.ITAK (grant no. 120Z706). C.D.D. gratefully acknowledges funding from the Sigrid Juselius Foundation, the Academy of Finland (project 331556), and the Jane and Aatos Erkko Foundation. C.D.D. and M.S. appreciate the excellent computational support from the TUBITAKULAKBIM High Performance and Grid Computing Center (TRUBA resources) and from the Center for Scientific Computing, Finland (Puhti supercomputer). | |
dc.description.volume | 12 | |
dc.identifier.doi | 10.3390/membranes12080752 | |
dc.identifier.eissn | 2077-0375 | |
dc.identifier.quartile | Q2 | |
dc.identifier.scopus | 2-s2.0-85137360333 | |
dc.identifier.uri | https://doi.org/10.3390/membranes12080752 | |
dc.identifier.uri | https://hdl.handle.net/20.500.14288/15651 | |
dc.identifier.wos | 846548800001 | |
dc.keywords | Peptide conformation | |
dc.keywords | Mitochondria | |
dc.keywords | Mitochondrial outer membrane | |
dc.keywords | Tail anchor | |
dc.keywords | Molecular dynamics | |
dc.keywords | Lipid membrane | |
dc.keywords | Wd repeat protein | |
dc.keywords | Molecular-dynamics | |
dc.keywords | Force-field | |
dc.keywords | High-resolution | |
dc.keywords | Insertion | |
dc.keywords | Fission | |
dc.keywords | Dnm1p | |
dc.keywords | Mdv1p | |
dc.keywords | Biogenesis | |
dc.keywords | Gtpase | |
dc.language.iso | eng | |
dc.publisher | MDPI | |
dc.relation.ispartof | Membranes | |
dc.subject | Biochemistry | |
dc.subject | Molecular biology | |
dc.subject | Chemistry | |
dc.subject | Physical chemistry | |
dc.subject | Engineering | |
dc.subject | Chemical engineering | |
dc.subject | Materials science | |
dc.subject | Polymer science | |
dc.title | Modeling adsorption, conformation, and orientation of the Fis1 tail anchor at the mitochondrial outer membrane | |
dc.type | Journal Article | |
dspace.entity.type | Publication | |
local.contributor.kuauthor | Özgür, Beytullah | |
local.contributor.kuauthor | Sayar, Mehmet | |
local.publication.orgunit1 | GRADUATE SCHOOL OF SCIENCES AND ENGINEERING | |
local.publication.orgunit1 | College of Engineering | |
local.publication.orgunit2 | Department of Mechanical Engineering | |
local.publication.orgunit2 | Graduate School of Sciences and Engineering | |
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