Publication: GTP-dependent K-Ras dimerization
dc.contributor.coauthor | Chavan, Tanmay S. | |
dc.contributor.coauthor | Freed, Benjamin C. | |
dc.contributor.coauthor | Jang, Hyunbum | |
dc.contributor.coauthor | Khavrutskii, Lyuba | |
dc.contributor.coauthor | Freed, R. Natasha | |
dc.contributor.coauthor | Dyba, Marzena A. | |
dc.contributor.coauthor | Stefanisko, Karen | |
dc.contributor.coauthor | Tarasov, Sergey G. | |
dc.contributor.coauthor | Gursoy, Attila | |
dc.contributor.coauthor | Keskin, Ozlem | |
dc.contributor.coauthor | Tarasova, Nadya I. | |
dc.contributor.coauthor | Gaponenko, Vadim | |
dc.contributor.coauthor | Nussinov, Ruth | |
dc.contributor.department | N/A | |
dc.contributor.department | Department of Chemical and Biological Engineering | |
dc.contributor.department | Department of Computer Engineering | |
dc.contributor.kuauthor | Muratçıoğlu, Serena | |
dc.contributor.kuauthor | Keskin, Özlem | |
dc.contributor.kuauthor | Gürsoy, Attila | |
dc.contributor.kuprofile | PhD Student | |
dc.contributor.kuprofile | Faculty Member | |
dc.contributor.kuprofile | Faculty Member | |
dc.contributor.other | Department of Chemical and Biological Engineering | |
dc.contributor.other | Department of Computer Engineering | |
dc.contributor.schoolcollegeinstitute | Graduate School of Sciences and Engineering | |
dc.contributor.schoolcollegeinstitute | College of Engineering | |
dc.contributor.schoolcollegeinstitute | College of Engineering | |
dc.contributor.yokid | N/A | |
dc.contributor.yokid | 26605 | |
dc.contributor.yokid | 8745 | |
dc.date.accessioned | 2024-11-09T23:54:34Z | |
dc.date.issued | 2015 | |
dc.description.abstract | Ras proteins recruit and activate effectors, including Raf, that transmit receptor-initiated signals. Monomeric Ras can bind Raf; however, activation of Raf requires its dimerization. It has been suspected that dimeric Ras may promote dimerization and activation of Raf. Here, we show that the GTP-bound catalytic domain of K-Ras4B, a highly oncogenic splice variant of the K-Ras isoform, forms stable homodimers. We observe two major dimer interfaces. The first, highly populated beta-sheet dimer interface is at the Switch I and effector binding regions, overlapping the binding surfaces of Raf, PI3K, RalGDS, and additional effectors. This interface has to be inhibitory to such effectors. The second, helical interface also overlaps the binding sites of some effectors. This interface may promote activation of Raf. Our data reveal how Ras self-association can regulate effector binding and activity, and suggest that disruption of the helical dimer interface by drugs may abate Raf signaling in cancer. | |
dc.description.indexedby | WoS | |
dc.description.indexedby | Scopus | |
dc.description.indexedby | PubMed | |
dc.description.issue | 7 | |
dc.description.openaccess | YES | |
dc.description.publisherscope | International | |
dc.description.sponsoredbyTubitakEu | N/A | |
dc.description.sponsorship | American Cancer Society [RGS-09-057-01-GMC] | |
dc.description.sponsorship | National Cancer Institute [R01 CA135341] | |
dc.description.sponsorship | Frederick National Laboratory for Cancer Research, NIH [HHSN261200800001E] | |
dc.description.sponsorship | Intramural Research Program of NIH, Frederick National Lab, Center for Cancer Research We thank Finn Mannerings for her help with protein expression and purification of K-Ras protein. We gratefully acknowledge the generous support from the American Cancer Society Grant RGS-09-057-01-GMC and the National Cancer Institute Grant R01 CA135341 to V.G. This project has been funded in whole or in part with Federal funds from the Frederick National Laboratory for Cancer Research, NIH, under contract HHSN261200800001E. This research was supported (in part) by the Intramural Research Program of NIH, Frederick National Lab, Center for Cancer Research. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products or organizations imply endorsement by the US Government. Computations have been performed at the high-performance center, Koc University. | |
dc.description.volume | 23 | |
dc.identifier.doi | 10.1016/j.str.2015.04.019 | |
dc.identifier.eissn | 1878-4186 | |
dc.identifier.issn | 0969-2126 | |
dc.identifier.quartile | Q1 | |
dc.identifier.scopus | 2-s2.0-84936847680 | |
dc.identifier.uri | http://dx.doi.org/10.1016/j.str.2015.04.019 | |
dc.identifier.uri | https://hdl.handle.net/20.500.14288/15221 | |
dc.identifier.wos | 360312200019 | |
dc.keywords | Forms dimers | |
dc.keywords | Predictions | |
dc.language | English | |
dc.publisher | Cell Press | |
dc.source | Structure | |
dc.subject | Biochemistry | |
dc.subject | Molecular biology | |
dc.subject | Biophysics | |
dc.subject | Cell biology | |
dc.title | GTP-dependent K-Ras dimerization | |
dc.type | Journal Article | |
dspace.entity.type | Publication | |
local.contributor.authorid | N/A | |
local.contributor.authorid | 0000-0002-4202-4049 | |
local.contributor.authorid | 0000-0002-2297-2113 | |
local.contributor.kuauthor | Muratçıoğlu, Serena | |
local.contributor.kuauthor | Keskin, Özlem | |
local.contributor.kuauthor | Gürsoy, Attila | |
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