Publication:
GTP-dependent K-Ras dimerization

dc.contributor.coauthorChavan, Tanmay S.
dc.contributor.coauthorFreed, Benjamin C.
dc.contributor.coauthorJang, Hyunbum
dc.contributor.coauthorKhavrutskii, Lyuba
dc.contributor.coauthorFreed, R. Natasha
dc.contributor.coauthorDyba, Marzena A.
dc.contributor.coauthorStefanisko, Karen
dc.contributor.coauthorTarasov, Sergey G.
dc.contributor.coauthorGursoy, Attila
dc.contributor.coauthorKeskin, Ozlem
dc.contributor.coauthorTarasova, Nadya I.
dc.contributor.coauthorGaponenko, Vadim
dc.contributor.coauthorNussinov, Ruth
dc.contributor.departmentN/A
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.departmentDepartment of Computer Engineering
dc.contributor.kuauthorMuratçıoğlu, Serena
dc.contributor.kuauthorKeskin, Özlem
dc.contributor.kuauthorGürsoy, Attila
dc.contributor.kuprofilePhD Student
dc.contributor.kuprofileFaculty Member
dc.contributor.kuprofileFaculty Member
dc.contributor.otherDepartment of Chemical and Biological Engineering
dc.contributor.otherDepartment of Computer Engineering
dc.contributor.schoolcollegeinstituteGraduate School of Sciences and Engineering
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.yokidN/A
dc.contributor.yokid26605
dc.contributor.yokid8745
dc.date.accessioned2024-11-09T23:54:34Z
dc.date.issued2015
dc.description.abstractRas proteins recruit and activate effectors, including Raf, that transmit receptor-initiated signals. Monomeric Ras can bind Raf; however, activation of Raf requires its dimerization. It has been suspected that dimeric Ras may promote dimerization and activation of Raf. Here, we show that the GTP-bound catalytic domain of K-Ras4B, a highly oncogenic splice variant of the K-Ras isoform, forms stable homodimers. We observe two major dimer interfaces. The first, highly populated beta-sheet dimer interface is at the Switch I and effector binding regions, overlapping the binding surfaces of Raf, PI3K, RalGDS, and additional effectors. This interface has to be inhibitory to such effectors. The second, helical interface also overlaps the binding sites of some effectors. This interface may promote activation of Raf. Our data reveal how Ras self-association can regulate effector binding and activity, and suggest that disruption of the helical dimer interface by drugs may abate Raf signaling in cancer.
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.issue7
dc.description.openaccessYES
dc.description.publisherscopeInternational
dc.description.sponsoredbyTubitakEuN/A
dc.description.sponsorshipAmerican Cancer Society [RGS-09-057-01-GMC]
dc.description.sponsorshipNational Cancer Institute [R01 CA135341]
dc.description.sponsorshipFrederick National Laboratory for Cancer Research, NIH [HHSN261200800001E]
dc.description.sponsorshipIntramural Research Program of NIH, Frederick National Lab, Center for Cancer Research We thank Finn Mannerings for her help with protein expression and purification of K-Ras protein. We gratefully acknowledge the generous support from the American Cancer Society Grant RGS-09-057-01-GMC and the National Cancer Institute Grant R01 CA135341 to V.G. This project has been funded in whole or in part with Federal funds from the Frederick National Laboratory for Cancer Research, NIH, under contract HHSN261200800001E. This research was supported (in part) by the Intramural Research Program of NIH, Frederick National Lab, Center for Cancer Research. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products or organizations imply endorsement by the US Government. Computations have been performed at the high-performance center, Koc University.
dc.description.volume23
dc.identifier.doi10.1016/j.str.2015.04.019
dc.identifier.eissn1878-4186
dc.identifier.issn0969-2126
dc.identifier.quartileQ1
dc.identifier.scopus2-s2.0-84936847680
dc.identifier.urihttp://dx.doi.org/10.1016/j.str.2015.04.019
dc.identifier.urihttps://hdl.handle.net/20.500.14288/15221
dc.identifier.wos360312200019
dc.keywordsForms dimers
dc.keywordsPredictions
dc.languageEnglish
dc.publisherCell Press
dc.sourceStructure
dc.subjectBiochemistry
dc.subjectMolecular biology
dc.subjectBiophysics
dc.subjectCell biology
dc.titleGTP-dependent K-Ras dimerization
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.authoridN/A
local.contributor.authorid0000-0002-4202-4049
local.contributor.authorid0000-0002-2297-2113
local.contributor.kuauthorMuratçıoğlu, Serena
local.contributor.kuauthorKeskin, Özlem
local.contributor.kuauthorGürsoy, Attila
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relation.isOrgUnitOfPublication89352e43-bf09-4ef4-82f6-6f9d0174ebae
relation.isOrgUnitOfPublication.latestForDiscovery89352e43-bf09-4ef4-82f6-6f9d0174ebae

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