Publication: Review: cancer and neurodevelopmental disorders: multi-scale reasoning and computational guide
dc.contributor.coauthor | Nussinov, Ruth | |
dc.contributor.coauthor | Yavuz, Bengi Ruken | |
dc.contributor.coauthor | Arıcı, M. Kaan | |
dc.contributor.coauthor | Jang, Hyunbum | |
dc.contributor.department | Department of Chemical and Biological Engineering | |
dc.contributor.department | Department of Chemical and Biological Engineering | |
dc.contributor.kuauthor | Demirel, Habibe Cansu | |
dc.contributor.kuauthor | Tunçbağ, Nurcan | |
dc.contributor.researchcenter | Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM) | |
dc.contributor.schoolcollegeinstitute | Graduate School of Sciences and Engineering | |
dc.contributor.schoolcollegeinstitute | College of Engineering | |
dc.date.accessioned | 2024-12-29T09:37:35Z | |
dc.date.issued | 2024 | |
dc.description.abstract | The connection and causality between cancer and neurodevelopmental disorders have been puzzling. How can the same cellular pathways, proteins, and mutations lead to pathologies with vastly different clinical presentations? And why do individuals with neurodevelopmental disorders, such as autism and schizophrenia, face higher chances of cancer emerging throughout their lifetime? Our broad review emphasizes the multi-scale aspect of this type of reasoning. As these examples demonstrate, rather than focusing on a specific organ system or disease, we aim at the new understanding that can be gained. Within this framework, our review calls attention to computational strategies which can be powerful in discovering connections, causalities, predicting clinical outcomes, and are vital for drug discovery. Thus, rather than centering on the clinical features, we draw on the rapidly increasing data on the molecular level, including mutations, isoforms, three-dimensional structures, and expression levels of the respective disease-associated genes. Their integrated analysis, together with chromatin states, can delineate how, despite being connected, neurodevelopmental disorders and cancer differ, and how the same mutations can lead to different clinical symptoms. Here, we seek to uncover the emerging connection between cancer, including pediatric tumors, and neurodevelopmental disorders, and the tantalizing questions that this connection raises. | |
dc.description.indexedby | WoS | |
dc.description.indexedby | Scopus | |
dc.description.indexedby | PubMed | |
dc.description.openaccess | Green Published, gold | |
dc.description.publisherscope | International | |
dc.description.sponsors | The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. NT was supported by the Research Projects Funding Program of TUBITAK under Project 121C292. This project has been funded in whole or in part with federal funds from the National Cancer Institute, National Institutes of Health, under contract HHSN261201500003I. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations implyendorsement by the U.S. Government. This research was supported [in part] by the Intramural Research Program of the NIH, National Cancer Institute, Center for Cancer Research. | |
dc.description.volume | 12 | |
dc.identifier.doi | 10.3389/fcell.2024.1376639 | |
dc.identifier.issn | 2296-634X | |
dc.identifier.quartile | Q1 | |
dc.identifier.scopus | 2-s2.0-85198513966 | |
dc.identifier.uri | https://doi.org/10.3389/fcell.2024.1376639 | |
dc.identifier.uri | https://hdl.handle.net/20.500.14288/22396 | |
dc.identifier.wos | 1271145700001 | |
dc.keywords | Pediatric tumors | |
dc.keywords | Comorbidity | |
dc.keywords | Artificial intelligence | |
dc.keywords | Machine learning | |
dc.keywords | Mutations | |
dc.keywords | Transcriptomics | |
dc.keywords | Protein-protein interaction (PPI) networks | |
dc.keywords | Chromatin | |
dc.language | en | |
dc.publisher | Frontiers Media Sa | |
dc.source | Frontiers in Cell and Developmental Biology | |
dc.subject | Cell biology | |
dc.subject | Developmental biology | |
dc.title | Review: cancer and neurodevelopmental disorders: multi-scale reasoning and computational guide | |
dc.type | Review | |
dspace.entity.type | Publication | |
local.contributor.kuauthor | Demirel, Habibe Cansu | |
local.contributor.kuauthor | Tunçbağ, Nurcan | |
relation.isOrgUnitOfPublication | c747a256-6e0c-4969-b1bf-3b9f2f674289 | |
relation.isOrgUnitOfPublication.latestForDiscovery | c747a256-6e0c-4969-b1bf-3b9f2f674289 |