Publication:
Review: cancer and neurodevelopmental disorders: multi-scale reasoning and computational guide

dc.contributor.coauthorNussinov, Ruth
dc.contributor.coauthorYavuz, Bengi Ruken
dc.contributor.coauthorArıcı, M. Kaan
dc.contributor.coauthorJang, Hyunbum
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.kuauthorDemirel, Habibe Cansu
dc.contributor.kuauthorTunçbağ, Nurcan
dc.contributor.researchcenterKoç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM)
dc.contributor.schoolcollegeinstituteGraduate School of Sciences and Engineering
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.date.accessioned2024-12-29T09:37:35Z
dc.date.issued2024
dc.description.abstractThe connection and causality between cancer and neurodevelopmental disorders have been puzzling. How can the same cellular pathways, proteins, and mutations lead to pathologies with vastly different clinical presentations? And why do individuals with neurodevelopmental disorders, such as autism and schizophrenia, face higher chances of cancer emerging throughout their lifetime? Our broad review emphasizes the multi-scale aspect of this type of reasoning. As these examples demonstrate, rather than focusing on a specific organ system or disease, we aim at the new understanding that can be gained. Within this framework, our review calls attention to computational strategies which can be powerful in discovering connections, causalities, predicting clinical outcomes, and are vital for drug discovery. Thus, rather than centering on the clinical features, we draw on the rapidly increasing data on the molecular level, including mutations, isoforms, three-dimensional structures, and expression levels of the respective disease-associated genes. Their integrated analysis, together with chromatin states, can delineate how, despite being connected, neurodevelopmental disorders and cancer differ, and how the same mutations can lead to different clinical symptoms. Here, we seek to uncover the emerging connection between cancer, including pediatric tumors, and neurodevelopmental disorders, and the tantalizing questions that this connection raises.
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.openaccessGreen Published, gold
dc.description.publisherscopeInternational
dc.description.sponsorsThe author(s) declare that financial support was received for the research, authorship, and/or publication of this article. NT was supported by the Research Projects Funding Program of TUBITAK under Project 121C292. This project has been funded in whole or in part with federal funds from the National Cancer Institute, National Institutes of Health, under contract HHSN261201500003I. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations implyendorsement by the U.S. Government. This research was supported [in part] by the Intramural Research Program of the NIH, National Cancer Institute, Center for Cancer Research.
dc.description.volume12
dc.identifier.doi10.3389/fcell.2024.1376639
dc.identifier.issn2296-634X
dc.identifier.quartileQ1
dc.identifier.scopus2-s2.0-85198513966
dc.identifier.urihttps://doi.org/10.3389/fcell.2024.1376639
dc.identifier.urihttps://hdl.handle.net/20.500.14288/22396
dc.identifier.wos1271145700001
dc.keywordsPediatric tumors
dc.keywordsComorbidity
dc.keywordsArtificial intelligence
dc.keywordsMachine learning
dc.keywordsMutations
dc.keywordsTranscriptomics
dc.keywordsProtein-protein interaction (PPI) networks
dc.keywordsChromatin
dc.languageen
dc.publisherFrontiers Media Sa
dc.sourceFrontiers in Cell and Developmental Biology
dc.subjectCell biology
dc.subjectDevelopmental biology
dc.titleReview: cancer and neurodevelopmental disorders: multi-scale reasoning and computational guide
dc.typeReview
dspace.entity.typePublication
local.contributor.kuauthorDemirel, Habibe Cansu
local.contributor.kuauthorTunçbağ, Nurcan
relation.isOrgUnitOfPublicationc747a256-6e0c-4969-b1bf-3b9f2f674289
relation.isOrgUnitOfPublication.latestForDiscoveryc747a256-6e0c-4969-b1bf-3b9f2f674289

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