Publication: Modeling and analysis of SCFA-Driven vagus nerve signaling in the gut-brain axis via molecular communication
| dc.contributor.department | Department of Electrical and Electronics Engineering | |
| dc.contributor.kuauthor | Ortlek, Beyza Ezgi | |
| dc.contributor.kuauthor | Akan, Özgür Barış | |
| dc.contributor.schoolcollegeinstitute | College of Engineering | |
| dc.date.accessioned | 2026-01-16T08:46:29Z | |
| dc.date.available | 2026-01-16 | |
| dc.date.issued | 2025 | |
| dc.description.abstract | Molecular communication (MC) is a bio-inspired communication paradigm that utilizes molecules to transfer information and offers a robust framework for understanding biological signaling systems. This paper introduces a novel end-to-end MC framework for short-chain fatty acid (SCFA)-driven vagus nerve signaling within the gut-brain axis (GBA) to enhance our understanding of gut-brain communication mechanisms. SCFA molecules, produced by gut microbiota, serve as important biomarkers in physiological and psychological processes, including neurodegenerative and mental health disorders. The developed end-to-end model integrates SCFA binding to vagal afferent fibers, G protein-coupled receptor (GPCR)-mediated calcium signaling, and Hodgkin-Huxley-based action potential generation into a comprehensive vagus nerve signaling mechanism through GBA. Information-theoretic metrics such as mutual information and delay are used to evaluate the efficiency of this SCFA-driven signaling pathway model. Simulations demonstrate how molecular inputs translate into neural outputs, highlighting critical aspects that govern gut-brain communication. In this work, the integration of SCFA-driven signaling into the MC framework provides a novel perspective on gut-brain communication and paves the way for the development of innovative therapeutic advancements targeting neurological and psychiatric disorders. | |
| dc.description.fulltext | No | |
| dc.description.harvestedfrom | Manual | |
| dc.description.indexedby | WOS | |
| dc.description.indexedby | Scopus | |
| dc.description.publisherscope | International | |
| dc.description.readpublish | N/A | |
| dc.description.sponsoredbyTubitakEu | N/A | |
| dc.description.sponsorship | AXA Research Fund, AXA Chair for Internet of Everything at Koc University | |
| dc.identifier.doi | 10.1109/TMBMC.2025.3585798 | |
| dc.identifier.eissn | 2332-7804 | |
| dc.identifier.embargo | No | |
| dc.identifier.endpage | 599 | |
| dc.identifier.issue | 4 | |
| dc.identifier.quartile | Q3 | |
| dc.identifier.scopus | 2-s2.0-105009967231 | |
| dc.identifier.startpage | 588 | |
| dc.identifier.uri | https://doi.org/10.1109/TMBMC.2025.3585798 | |
| dc.identifier.uri | https://hdl.handle.net/20.500.14288/32092 | |
| dc.identifier.volume | 11 | |
| dc.identifier.wos | 001642142400013 | |
| dc.keywords | Molecular communication | |
| dc.keywords | Physiology | |
| dc.keywords | Delays | |
| dc.keywords | Biology | |
| dc.keywords | Analytical models | |
| dc.keywords | Neurotransmitters | |
| dc.keywords | Immune system | |
| dc.keywords | Action potentials | |
| dc.keywords | Mutual information | |
| dc.keywords | Calcium | |
| dc.keywords | Channel modeling | |
| dc.keywords | Vagus nerve | |
| dc.keywords | Gut-brain axis | |
| dc.keywords | Neural communication | |
| dc.keywords | Diffusion modeling | |
| dc.keywords | Ligand-receptor interactions | |
| dc.keywords | Information theory | |
| dc.keywords | Mutual information | |
| dc.keywords | Signal propagation | |
| dc.language.iso | eng | |
| dc.publisher | Institute of Electrical and Electronics Engineers | |
| dc.relation.affiliation | Koç University | |
| dc.relation.collection | Koç University Institutional Repository | |
| dc.relation.ispartof | IEEE Transactions on Molecular Biological and Multi-Scale Communications | |
| dc.relation.openaccess | No | |
| dc.rights | Copyrighted | |
| dc.subject | Engineering, Electrical & Electronic | |
| dc.subject | Telecommunications | |
| dc.title | Modeling and analysis of SCFA-Driven vagus nerve signaling in the gut-brain axis via molecular communication | |
| dc.type | Journal Article | |
| dspace.entity.type | Publication | |
| person.familyName | Ortlek | |
| person.familyName | Akan | |
| person.givenName | Beyza Ezgi | |
| person.givenName | Özgür Barış | |
| relation.isOrgUnitOfPublication | 21598063-a7c5-420d-91ba-0cc9b2db0ea0 | |
| relation.isOrgUnitOfPublication.latestForDiscovery | 21598063-a7c5-420d-91ba-0cc9b2db0ea0 | |
| relation.isParentOrgUnitOfPublication | 8e756b23-2d4a-4ce8-b1b3-62c794a8c164 | |
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