Publication:
Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source "Turkish DeLight"

dc.contributor.coauthorCaliseki, Mehmet
dc.contributor.coauthorGoc, Gunce
dc.contributor.coauthorMermer, Arif
dc.contributor.coauthorYesilay, Gamze
dc.contributor.coauthorAltuntas, Sevde
dc.contributor.coauthorTateishi, Hiroshi
dc.contributor.coauthorOtsuka, Masami
dc.contributor.coauthorFujita, Mikako
dc.contributor.coauthorTekin, Saban
dc.contributor.coauthorCiftci, Halilibrahim
dc.contributor.coauthorDurdagi, Serdar
dc.contributor.coauthorDoganay, Gizem Dinler
dc.contributor.coauthorKaraca, Ezgi
dc.contributor.coauthorTurkoz, Burcu Kaplan
dc.contributor.coauthorKabasakal, Burak Veli
dc.contributor.coauthorKati, Ahmet
dc.contributor.departmentKUIS AI (Koç University & İş Bank Artificial Intelligence Center)
dc.contributor.departmentDepartment of Molecular Biology and Genetics
dc.contributor.departmentKUYBIIG-M (Koc University Structural Biology & Innovative Drug Development Center)
dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.kuauthorKarakadıoğlu, Gözde Usta
dc.contributor.kuauthorDemirci, Hasan
dc.contributor.kuauthorGül, Mehmet
dc.contributor.kuauthorJohnson, Jerome Austin
dc.contributor.kuauthorErtem, Fatma Betül
dc.contributor.kuauthorTokay, Nurettin
dc.contributor.kuauthorYıldırım, Günseli
dc.contributor.kuauthorDestan, Ebru
dc.contributor.kuauthorAyan, Esra
dc.contributor.kuauthorGüven, Ömür
dc.contributor.kuauthorÇakılkaya, Barış
dc.contributor.kuauthorKepçeoğlu, Abdullah
dc.contributor.kuauthorTosun, Bilge
dc.contributor.kuauthorKamel, Alaleh Shafiei
dc.contributor.kuauthorAtalay, Necati
dc.contributor.kuauthorArslan, Nazlı Eylül
dc.contributor.kuauthorYılmaz, Merve
dc.contributor.kuauthorBaldır, Nilüfer
dc.contributor.kuauthorKulakman, Cahine
dc.contributor.kuauthorNergiz, Zeliş
dc.contributor.kuauthorAkcan, Enver Kamil
dc.contributor.kuauthorYapıcı, İlkin
dc.contributor.kuauthorPaydos, Seyide Seda
dc.contributor.kuauthorÇınal, Zeynep Sena
dc.contributor.kuauthorŞabanoğlu, Kardelen
dc.contributor.kuauthorPazarçeviren, Ayşegül
dc.contributor.kuauthorYılmaz, Ayşenur
dc.contributor.kuauthorCanbay, Başak
dc.contributor.kuauthorAşçı, Bengisu
dc.contributor.kuauthorKartal, Esra
dc.contributor.kuauthorTavlı, Serra
dc.contributor.schoolcollegeinstituteCollege of Sciences
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.contributor.schoolcollegeinstituteResearch Center
dc.date.accessioned2025-01-19T10:28:28Z
dc.date.issued2023
dc.description.abstractX-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Turkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, Istanbul, Turkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and practical outlook of a state-of-the-art home-source X-ray, using lysozyme as a model protein. The methods and practice described in this article can be applied to any biological sample for structural studies. Therefore, this article will be a valuable practical guide from sample preparation to data analysis.
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.issue1
dc.description.openaccessGreen Published, gold, Green Submitted
dc.description.publisherscopeNational
dc.description.sponsoredbyTubitakEuN/A
dc.description.sponsorshipAuthors would like to dedicate this manuscript to the memory of Dr Albert E. Dahlberg and Dr Nizar Turker. The authors gratefully acknowledge the use of the services and Turkish Light Source (Turkish DeLight) X-ray facility at the University of Health Sciences, Experimental Medicine Application & Research Center, Validebag Research Park. The authors gratefully acknowledge use of the services and facilities of the Koc University Isbank Infectious Disease Center (KUISCID). H.D. acknowledges support from NSF Science and Technology Center grant NSF-1231306 (Biology with X-ray Lasers, BioXFEL). A.K. acknowledges support from The Scientific and Technological Research Council of Tuerkiye (TUEBITAK, 2218 -National Postdoctoral Research Fellowship Program under project number 118C476). G.G., M.C., and B.V.K. are funded by TUEBITAK 2232 International Outstanding Researchers Program (Project No: 118C225). This publication has been produced benefiting from the 2232 International Fellowship for Outstanding Researchers Program, 2236 CoCirculation2 program and the 1001 Scientific and Technological Research Projects Funding Program of the TUEBITAK (Project Nos. 118C270, 121C063 and 120Z520). However, the entire responsibility of the publication belongs to the authors of the publication. The financial support received from TUEBITAK does not mean that the content of the publication is approved in a scientific sense by TUEBITAK. Coordinates of the lysozyme structure has been deposited in the Protein Data Bank under accession codes 7Y6A.
dc.description.volume47
dc.identifier.doi10.55730/1300-0152.2637
dc.identifier.eissn1303-6092
dc.identifier.issn1300-0152
dc.identifier.quartileQ3
dc.identifier.scopus2-s2.0-85149045424
dc.identifier.urihttps://doi.org/10.55730/1300-0152.2637
dc.identifier.urihttps://hdl.handle.net/20.500.14288/25728
dc.identifier.wos938252000002
dc.keywordsX-ray crystallography
dc.keywordsLight source
dc.keywordsStructural biology
dc.keywordsAtomic resolution
dc.keywordsDrug repurposing
dc.keywordsDrug development
dc.keywordsStructural dynamics
dc.language.isoeng
dc.publisherTubitak Scientific & Technological Research Council Turkey
dc.relation.grantnoNSF Science and Technology Center; Scientific and Technological Research Council of Tuerkiye (TUEBITAK [118C225]; TUEBITAK 2232 International Outstanding Researchers Program [118C270]; 1001 Scientific and Technological Research Projects Funding Program of the TUEBITAK [NSF-1231306]; [118C476]; [121C063]; [120Z520]
dc.relation.ispartofTurkish Journal of Biology
dc.subjectBiology
dc.titleCryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source "Turkish DeLight"
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.kuauthorAtalay, Necati
local.contributor.kuauthorAkcan, Enver Kamil
local.contributor.kuauthorGül, Mehmet
local.contributor.kuauthorAyan, Esra
local.contributor.kuauthorDestan, Ebru
local.contributor.kuauthorErtem, Fatma Betül
local.contributor.kuauthorTokay, Nurettin
local.contributor.kuauthorÇakılkaya, Barış
local.contributor.kuauthorNergiz, Zeliş
local.contributor.kuauthorKarakadıoğlu, Gözde Usta
local.contributor.kuauthorKepçeoğlu, Abdullah
local.contributor.kuauthorYapıcı, İlkin
local.contributor.kuauthorTosun, Bilge
local.contributor.kuauthorBaldır, Nilüfer
local.contributor.kuauthorYıldırım, Günseli
local.contributor.kuauthorJohnson, Jerome Austin
local.contributor.kuauthorGüven, Ömür
local.contributor.kuauthorShafiei, Alaleh
local.contributor.kuauthorArslan, Nazlı Eylül
local.contributor.kuauthorYılmaz, Merve
local.contributor.kuauthorKulakman, Cahine
local.contributor.kuauthorPaydos, Seyide Seda
local.contributor.kuauthorCınal, Zeynep Sena
local.contributor.kuauthorŞabanoğlu, Kardelen
local.contributor.kuauthorPazarçeviren, Ayşegül
local.contributor.kuauthorYılmaz, Ayşenur
local.contributor.kuauthorCanbay, Başak
local.contributor.kuauthorAşçı, Bengisu
local.contributor.kuauthorKartal, Esra
local.contributor.kuauthorTavlı, Serra
local.contributor.kuauthorDemirci, Hasan
local.publication.orgunit1GRADUATE SCHOOL OF SCIENCES AND ENGINEERING
local.publication.orgunit1College of Sciences
local.publication.orgunit1Research Center
local.publication.orgunit2Department of Molecular Biology and Genetics
local.publication.orgunit2KUYBIIG-M (Koc University Structural Biology & Innovative Drug Development Center)
local.publication.orgunit2KUIS AI (Koç University & İş Bank Artificial Intelligence Center)
local.publication.orgunit2Graduate School of Sciences and Engineering
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