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Permanent URI for this collectionhttps://hdl.handle.net/20.500.14288/3
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Publication Metadata only The impact of the vitamin D and resveratrol administration on the stiffness and elasticity of T2DM rat aorta associated with the trace element and mineral levels(Elsevier Inc., 2024) Anapali-Aykac, Merve; Ulutin, Turgut; Komurcu-Bayrak, Evrim; Kaya-Dagistanli, Fatma; Department of Mechanical Engineering; Ulusu, Nuriye Nuray; Aydemir, Duygu; Salman, Naveed; Karimzadehkhouei, Mehrdad; Alaca, Burhanettin Erdem; Department of Mechanical Engineering; Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM); Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); n2STAR-Koç University Nanofabrication and Nanocharacterization Center for Scientifc and Technological Advanced Research; School of Medicine; Graduate School of Health Sciences; College of EngineeringBackground: Type 2 diabetes mellitus (T2DM) is directly associated with increased aortic stiffness, reduced aortic elasticity, and aortic dissection, which are independent risk factors for cardiovascular death. Since Vit D and resveratrol have been reported due to their cardioprotective effects, in this study, we aim to evaluate the impact of Vit D and resveratrol treatment alone or in combination on the aortic health associated with trace element and mineral levels in a high-fructose diet/streptozotocin-induced T2DM model. Methods: We investigated biomechanical changes of the aorta samples via a custom-built stretcher, where trace element and mineral levels in aorta samples were determined via inductively coupled plasma mass spectrometry (ICP-MS) following acidic microwave digestion. Results: Vitamin D treatment ameliorated the adverse effects of T2DM on aortic stiffness, aortic elasticity, and relaxation modulus in diabetic rats. Trace element and mineral levels correlated with cardiovascular homeostasis, including Fe, Cu, Zn, Se, and Na, have been regulated upon Vit D treatment in diabetic and healthy rats. On the other hand, resveratrol treatment alone or in combination with Vit D did not show any positive effects on biomechanical properties and trace element metabolism of diabetic or healthy rats, according to our data. Conclusion: Vit D can be used in T2DM patients to protect their cardiovascular health and should be considered a promising targeted therapy approach via nanoparticles to target cardiovascular diseases in the future.Publication Metadata only Deep learning-augmented T-junction droplet generation(Elsevier Inc., 2024) N/A; Department of Mechanical Engineering; Ahmadpour, Abdollah; Shojaeian, Mostafa; Taşoğlu, Savaş; Department of Mechanical Engineering; KU Arçelik Research Center for Creative Industries (KUAR) / KU Arçelik Yaratıcı Endüstriler Uygulama ve Araştırma Merkezi (KUAR); Koç Üniversitesi İş Bankası Yapay Zeka Uygulama ve Araştırma Merkezi (KUIS AI)/ Koç University İş Bank Artificial Intelligence Center (KUIS AI); Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM); College of EngineeringDroplet generation technology has become increasingly important in a wide range of applications, including biotechnology and chemical synthesis. T-junction channels are commonly used for droplet generation due to their integration capability of a larger number of droplet generators in a compact space. In this study, a finite element analysis (FEA) approach is employed to simulate droplet production and its dynamic regimes in a T-junction configuration and collect data for post-processing analysis. Next, image analysis was performed to calculate the droplet length and determine the droplet generation regime. Furthermore, machine learning (ML) and deep learning (DL) algorithms were applied to estimate outputs through examination of input parameters within the simulation range. At the end, a graphical user interface (GUI) was developed for estimation of the droplet characteristics based on inputs, enabling the users to preselect their designs with comparable microfluidic configurations within the studied range.Publication Metadata only Optimizing porosity of the catalyst for hydrogen peroxide based thrusters(Elsevier B.V., 2024) Kokal, U.; Yıldız, Y.; Baysal, M.; Department of Mechanical Engineering; Emerce, Nur Ber; Yıldız, Utku Can; Karabeyoğlu, Mustafa Arif; Department of Mechanical Engineering; Graduate School of Sciences and Engineering; College of EngineeringThe texture of the catalyst support is a crucial factor for H2O2 decomposition due to the expansion of H2O2 in monopropellant thrusters, which can lead to overpressure and catalyst breakage. Therefore, alumina supports with 5 wt%, 10 wt%, and 15 wt% microcrystalline cellulose templates were studied to create macropores. MIP and SEM analysis showed that microcrystalline cellulose template increases the macropore fraction. Low-concentration H2O2 decomposition experiments revealed that over 10 wt% microcrystalline cellulose prevented catalyst breakage. Additionally, the thermal durability of the catalyst was studied at different calcination temperatures. Alumina with 15 wt% microcrystalline cellulose and a 900 °C calcination temperature exhibited the highest fracture strength and suitable reaction kinetics. The catalysts were tested in high-concentration H2O2 monopropellant thruster. The results demonstrated enhancement in catalyst size retention, pressure stability, and pressure drop. Introducing macropores through microcrystalline cellulose addition overcomes unstable thruster performance and it extends catalyst lifespan in H2O2 monopropellant thrusters’ applications. © 2023 Elsevier B.V.Publication Metadata only Perspective on smart materials for empowering small-scale manipulation(Elsevier B.V., 2024) Zhang, Mingchao; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of EngineeringPublication Metadata only Enhanced co-design and evaluation of a collective robotic construction system for the assembly of large-scale in-plane timber structures(Elsevier B.V., 2024) Leder, Samuel; Kim, HyunGyu; Menges, Achim; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of EngineeringCollective robotic construction (CRC) is an emerging approach to construction automation based on the collaboration among teams of small mobile robots. This paper enhances an existing modular CRC system, showcasing its capability to assemble full-scale in-plane timber structures. Utilizing strategies of co-design, the robotic actuators were updated to accommodate material tolerance in the passive building material, timber struts, which they use for locomotion and assemble into structures. A custom effector was also developed to establish architecturally relevant, structural connections between struts. The enhancements address two major challenges in CRC system development: material tolerance and connections. To showcase these research findings and compare with other construction automation systems, a reinforced slab structure was assembled. With a building envelop of 0.485 m3, this is one of the largest structures assembled by a CRC system. As such, the work highlights the potential applicability of CRC in real-world architectural projects. © 2024 The Author(s)Publication Metadata only Biocorrosion behavior TiTaNbZrMo high-entropy alloy thin films sputtered on NiTi shape memory alloy substrates with controlled microstructure(Elsevier B.V., 2024) Department of Mechanical Engineering; Hosseinjany, Azizeh; Canadinç, Demircan; Yağcı, Mustafa Barış; Department of Mechanical Engineering; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; College of EngineeringThis paper presents the experimental findings on the effect of deposition conditions on the microstructure of the corrosion-resistant TiTaNbZrMo high entropy alloy (HEA) thin films deposited on NiTi substrates with the purpose of enhancing biocompatibility of the NiTi shape memory alloy (SMA). For this purpose, RF magnetron sputtering was employed to fabricate TiTaNbZrMo HEA films with 750 nm and 1500 nm thicknesses. Static immersion experiments were conducted in simulated body fluid (SBF) and artificial saliva (AS) solutions for 1, 14, and 28 days to establish the relationship between Ni ion release and deposition parameters. The results revealed that thin films grown under low working pressure exhibited crystalline body-centered cubic (BCC) microstructure with a highly dense, compact, and crack-free structure, while those deposited under high-pressure conditions exhibited an amorphous structure with inherent cracks. The biocorrosion test results indicated that the dense and compact thin film fulfilled the expected corrosion resistance requirements for prolonged utility in human body. Moreover, the HEA films revealed an outstanding amount of hydroxyapatite (HAp) formation, indicating remarkable bioactivity and favorable bone-bonding capabilities. The findings suggest that the HEA films deposited under low working pressures could constitute promising alternatives to conventional coatings on NiTi SMAs.Publication Metadata only Digital monitoring of the microchannel filling flow dynamics using a non-contactless smartphone-based nano-liter precision flow velocity meter(Elsevier Advanced Technology, 2024) Xu, Weiming; Köydemir, Hatice Ceylan; Department of Mechanical Engineering; Atik, Abdulkadir Yasin; Beker, Levent; Department of Mechanical Engineering; Graduate School of Sciences and Engineering; College of EngineeringMicrofluidic systems find widespread applications in diagnostics, biological research, chemistry, and engineering studies. Among their many critical parameters, flow rate plays a pivotal role in maintaining the functionality of microfluidic systems, including droplet-based microfluidic devices and those used in cell culture. It also significantly influences microfluidic mixing processes. Although various flow rate measurement devices have been developed, the challenge remains in accurately measuring flow rates within customized channels. This paper presents the development of a 3D-printed smartphone-based flow velocity meter. The 3D-printed platform is angled at 30 degrees to achieve transparent flow visualization, and it doesn't require any external optical components such as external lenses and filters. Two LED modules integrated into the platform create a uniform illumination environment for video capture, powered directly by the smartphone. The performance of our platform, combined with a customized video processing algorithm, was assessed in three different channel types: uniform straight channels, straight channels with varying widths, and vessel-like channel patterns to demonstrate its versatility. Our device effectively measured flow velocities from 5.43 mm/s to 24.47 mm/s, with video quality at 1080p resolution and 60 frames per second, for which the measurement range can be extended by adjusting the frame rate. This flow velocity meter can be a useful analytical tool to evaluate and enhance microfluidic channel designs of various lab-on-a-chip applications.Publication Metadata only Mechanical properties of silicon nanowires with native oxide surface state(Elsevier, 2024) Department of Mechanical Engineering; Zarepakzad, Sina; Esfahani, Mohammad Nasr; Alaca, Burhanettin Erdem; Department of Mechanical Engineering; n2STAR-Koç University Nanofabrication and Nanocharacterization Center for Scientifc and Technological Advanced Research; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; College of EngineeringSilicon nanowires have attracted considerable interest due to their wide-ranging applications in nanoelectromechanical systems and nanoelectronics. Molecular dynamics simulations are powerful tools for studying the mechanical properties of nanowires. However, these simulations encounter challenges in interpreting the mechanical behavior and brittle to ductile transition of silicon nanowires, primarily due to surface effects such as the assumption of an unreconstructed surface state. This study specifically focuses on the tensile deformation of silicon nanowires with a native oxide layer, considering critical parameters such as cross-sectional shape, length -to -critical dimension ratio, temperature, the presence of nano -voids, and strain rate. By incorporating the native oxide layer, the article aims to provide a more realistic representation of the mechanical behavior for different critical dimensions and crystallographic orientations of silicon nanowires. The findings contribute to the advancement of knowledge regarding size -dependent elastic properties and strength of silicon nanowires.Publication Metadata only Loop-mediated isothermal amplification-integrated CRISPR methods for infectious disease diagnosis at point of care(American Chemical Society, 2023) Yetisen, Ali K.; Department of Mechanical Engineering; Yığcı, Defne; Atçeken, Nazente; Taşoğlu, Savaş; Department of Mechanical Engineering; N/A; Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM); KU Arçelik Research Center for Creative Industries (KUAR) / KU Arçelik Yaratıcı Endüstriler Uygulama ve Araştırma Merkezi (KUAR); School of Medicine; College of EngineeringInfectious diseases continue to pose an imminent threat to global public health, leading to high numbers of deaths every year and disproportionately impacting developing countries where access to healthcare is limited. Biological, environmental, and social phenomena, including climate change, globalization, increased population density, and social inequity, contribute to the emergence of novel communicable diseases. Rapid and accurate diagnoses of infectious diseases are essential to preventing the transmission of infectious diseases. Although some commonly used diagnostic technologies provide highly sensitive and specific measurements, limitations including the requirement for complex equipment/infrastructure and refrigeration, the need for trained personnel, long sample processing times, and high cost remain unresolved. To ensure global access to affordable diagnostic methods, loop-mediated isothermal amplification (LAMP) integrated clustered regularly interspaced short palindromic repeat (CRISPR) based pathogen detection has emerged as a promising technology. Here, LAMP-integrated CRISPR-based nucleic acid detection methods are discussed in point-of-care (PoC) pathogen detection platforms, and current limitations and future directions are also identified.Publication Metadata only Design and manufacturing of a hip joint motion simulator with a novel modular design approach(Springer Heidelberg, 2023) Mihcin, Senay; Department of Mechanical Engineering; Torabnia, Shams; Lazoğlu, İsmail; Department of Mechanical Engineering; Manufacturing and Automation Research Center (MARC); Graduate School of Sciences and Engineering; College of EngineeringThe study is aimed to develop a hip joint wear simulator using a modular design approach to help experimentally monitor and control critical wear parameters to validate in-silico wear models. The proper control and application of wear parameters such as the range of motion, and the applied force values while estimating the lost material due to wear are essential for thorough analysis of wear phenomena for artificial joints. The simulator's dynamics were first modeled, then dynamic loading data was used to calculate the forces, which were further used for topology optimization to reduce the forces acting on each joint. The reduction of the link weights, connected to the actuators, intends to improve the quality of motion transferred to the femoral head. The modular design approach enables topology-optimized geometry, associated gravitational and dynamic forces, resulting in a cost-effective, energy-efficient product. Moreover, this design allows integration of the subject specific data by allowing different boundary conditions following the requirements of industry 5.0. Overall, the in-vitro motion stimulations of the hip-joint prosthesis and the modular design approach used in the study might help improve the accuracy and the effectiveness of wear simulations, which could lead into the development of better and longer-lasting joint prostheses for all. The subject-specific and society-based daily life data implemented as boundary conditions enable inclusion of the personalized effects. Next, with the results of the simulator, CEN Workshop Agreement (CWA) application is intended to cover the personalized effects for previously excluded populations, providing solution to inclusive design for all.