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Permanent URI for this collectionhttps://hdl.handle.net/20.500.14288/3
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Publication Metadata only Loop-mediated isothermal amplification-integrated CRISPR methods for infectious disease diagnosis at point of care(American Chemical Society, 2023) Yetisen, Ali K.; Department of Mechanical Engineering; Yığcı, Defne; Atçeken, Nazente; Taşoğlu, Savaş; Department of Mechanical Engineering; N/A; Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM); KU Arçelik Research Center for Creative Industries (KUAR) / KU Arçelik Yaratıcı Endüstriler Uygulama ve Araştırma Merkezi (KUAR); School of Medicine; College of EngineeringInfectious diseases continue to pose an imminent threat to global public health, leading to high numbers of deaths every year and disproportionately impacting developing countries where access to healthcare is limited. Biological, environmental, and social phenomena, including climate change, globalization, increased population density, and social inequity, contribute to the emergence of novel communicable diseases. Rapid and accurate diagnoses of infectious diseases are essential to preventing the transmission of infectious diseases. Although some commonly used diagnostic technologies provide highly sensitive and specific measurements, limitations including the requirement for complex equipment/infrastructure and refrigeration, the need for trained personnel, long sample processing times, and high cost remain unresolved. To ensure global access to affordable diagnostic methods, loop-mediated isothermal amplification (LAMP) integrated clustered regularly interspaced short palindromic repeat (CRISPR) based pathogen detection has emerged as a promising technology. Here, LAMP-integrated CRISPR-based nucleic acid detection methods are discussed in point-of-care (PoC) pathogen detection platforms, and current limitations and future directions are also identified.Publication Metadata only Nanotechnology-based electrochemical biosensors for monitoring breast cancer biomarkers(John Wiley and Sons Inc, 2023) Nasrollahpour, Hassan; Khalilzadeh, Balal; Hasanzadeh, Mohammad; Rahbarghazi, Reza; Estrela, Pedro; Naseri, Abdolhossein; Sillanpää, Mika; Department of Mechanical Engineering; Taşoğlu, Savaş; Department of Mechanical Engineering; Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM); College of EngineeringBreast cancer is categorized as the most widespread cancer type among women globally. On-time diagnosis can decrease the mortality rate by making the right decision in the therapy procedure. These features lead to a reduction in medication time and socioeconomic burden. The current review article provides a comprehensive assessment for breast cancer diagnosis using nanomaterials and related technologies. Growing use of the nano/biotechnology domain in terms of electrochemical nanobiosensor designing was discussed in detail. In this regard, recent advances in nanomaterial applied for amplified biosensing methodologies were assessed for breast cancer diagnosis by focusing on the advantages and disadvantages of these approaches. We also monitored designing methods, advantages, and the necessity of suitable (nano) materials from a statistical standpoint. The main objective of this review is to classify the applicable biosensors based on breast cancer biomarkers. With numerous nano-sized platforms published for breast cancer diagnosis, this review tried to collect the most suitable methodologies for detecting biomarkers and certain breast cancer cell types.Publication Metadata only Liquid metal microdroplet-initiated ultra-fast polymerization of a stimuli-responsive hydrogel composite(Wiley-V C H Verlag Gmbh, 2023) Zhang, Jianhua; Liao, Jiahe; Liu, Zemin; Zhang, Rongjing; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineRecent advances in composite hydrogels achieve material enhancement or specialized stimuli-responsive functionalities by pairing with a functional filler. Liquid metals (LM) offer a unique combination of chemical, electrical, and mechanical properties that show great potential in hydrogel composites. Polymerization of hydrogels with LM microdroplets as initiators is a particularly interesting phenomenon that remains in its early stage of development. In this work, an LM-hydrogel composite is introduced, in which LM microdroplets dispersed inside the hydrogel matrix have dual functions as a polymerization initiator for a polyacrylic acid-poly vinyl alcohol (PAA/PVA) network and, once polymerized, as passive inclusion to influence its material and stimuli-responsive characteristics. It is demonstrated that LM microdroplets enable ultra-fast polymerization in approximate to 1 min, compared to several hours by conventional polymerization techniques. The results show several mechanical enhancements to the PAA/PVA hydrogels with LM-initiated polymerization. It is found that LM ratios strongly influence stimuli-responsive behaviors in the hydrogels, including swelling and ionic bending, where higher LM ratios are found to enhance ionic actuation performance. The dual roles of LM in this composite are analyzed using the experimental characterization results. These LM-hydrogel composites, which are biocompatible, open up new opportunities in future soft robotics and biomedical applications. A composite hydrogel embedded with liquid metal (LM) microdroplets is introduced, where the LM microdroplets have dual roles of initiating ultra-fast polymerization and passive inclusion. The physical effects of LM on polymerization and stimuli-responsive behaviors are analyzed, including swelling and ionic actuation due to osmotic pressure differences. Their benefits to the LM-hydrogel functionalities, such as robot locomotion, are demonstrated.Publication Metadata only Machine learning-based shear optimal adhesive microstructures with experimental validation(Wiley-V C H Verlag Gmbh, 2023) Dayan, Cem Balda; Son, Donghoon; Aghakhani, Amirreza; Wu, Yingdan; Demir, Sinan Ozgun; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineBioinspired fibrillar structures are promising for a wide range of disruptive adhesive applications. Especially micro/nanofibrillar structures on gecko toes can have strong and controllable adhesion and shear on a wide range of surfaces with residual-free, repeatable, self-cleaning, and other unique features. Synthetic dry fibrillar adhesives inspired by such biological fibrils are optimized in different aspects to increase their performance. Previous fibril designs for shear optimization are limited by predefined standard shapes in a narrow range primarily based on human intuition, which restricts their maximum performance. This study combines the machine learning-based optimization and finite-element-method-based shear mechanics simulations to find shear-optimized fibril designs automatically. In addition, fabrication limitations are integrated into the simulations to have more experimentally relevant results. The computationally discovered shear-optimized structures are fabricated, experimentally validated, and compared with the simulations. The results show that the computed shear-optimized fibrils perform better than the predefined standard fibril designs. This design optimization method can be used in future real-world shear-based gripping or nonslip surface applications, such as robotic pick-and-place grippers, climbing robots, gloves, electronic devices, and medical and wearable devices. This study combines the machine learning-based optimization and finite-element-method-based shear mechanics simulations to find shear-optimized fibril designs automatically. The results show that the computed optimal fibrils perform better than the predefined standard fibril designs. This design optimization framework can be used in future nonslip surface applications in grippers, robots, gloves, and electronic, medical, and wearable devices.Publication Metadata only Magnetic putty as a reconfigurable, recyclable, and accessible soft robotic material(Wiley-V C H Verlag Gmbh, 2023) Li, Meng; Pal, Aniket; Byun, Junghwan; Gardi, Gaurav; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineMagnetically hard materials are widely used to build soft magnetic robots, providing large magnetic force/torque and macrodomain programmability. However, their high magnetic coercivity often presents practical challenges when attempting to reconfigure magnetization patterns, requiring a large magnetic field or heating. In this study, magnetic putty is introduced as a magnetically hard and soft material with large remanence and low coercivity. It is shown that the magnetization of magnetic putty can be easily reoriented with maximum magnitude using an external field that is only one-tenth of its coercivity. Additionally, magnetic putty is a malleable, autonomous self-healing material that can be recycled and repurposed. The authors anticipate magnetic putty could provide a versatile and accessible tool for various magnetic robotics applications for fast prototyping and explorations for research and educational purposes. Permanent magnetic particles embedded in a viscoelastic putty matrix result in a self-healing soft magnetic material with both high remanence and low coercivity, providing hard-magnetic performance without the need for inaccessible strong magnetic fields. Programmable and reconfigurable magnetization, frequency-dependent force output, and easy to shape and assemble, magnetic putty can be a versatile tool in research prototyping and inspire future explorations.Publication Metadata only Liquid metal actuators: a comparative analysis of surface tension controlled actuation(Wiley-V C H Verlag Gmbh, 2023) Liao, Jiahe; Majidi, Carmel; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineLiquid metals, with their unique combination of electrical and mechanical properties, offer great opportunities for actuation based on surface tension modulation. Thanks to the scaling laws of surface tension, which can be electrochemically controlled at low voltages, liquid metal actuators stand out from other soft actuators for their remarkable characteristics such as high contractile strain rates and higher work densities at smaller length scales. This review summarizes the principles of liquid metal actuators and discusses their performance as well as theoretical pathways toward higher performances. The objective is to provide a comparative analysis of the ongoing development of liquid metal actuators. The design principles of the liquid metal actuators are analyzed, including low-level elemental principles (kinematics and electrochemistry), mid-level structural principles (reversibility, integrity, and scalability), and high-level functionalities. A wide range of practical use cases of liquid metal actuators from robotic locomotion and object manipulation to logic and computation is reviewed. From an energy perspective, strategies are compared for coupling the liquid metal actuators with an energy source toward fully untethered robots. The review concludes by offering a roadmap of future research directions of liquid metal actuators. This review summarizes the operation and design principles of surface tension-controlled actuation by liquid metals and discusses their performance and functionalities. Theoretical pathways toward higher performances, thanks to the unique scaling law of surface tension, are analyzed and compared to other popular soft actuators. The review concludes by offering a roadmap for future research directions.Publication Metadata only Nanodiamond-enhanced magnetic resonance imaging(Wiley-V C H Verlag Gmbh, 2023) Lazovic, Jelena; Goering, Eberhard; Wild, Anna-Maria; Schuetzenduebe, Peter; Shiva, Anitha; Loeffler, Jessica; Winter, Gordon; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineNanodiamonds (ND) hold great potential for diverse applications due to their biocompatibility, non-toxicity, and versatile functionalization. Direct visualization of ND by means of non-invasive imaging techniques will open new venues for labeling and tracking, offering unprecedented and unambiguous detection of labeled cells or nanodiamond-based drug carrier systems. The structural defects in diamonds, such as vacancies, can have paramagnetic properties and potentially act as contrast agents in magnetic resonance imaging (MRI). The smallest nanoscale diamond particles, detonation ND, are reported to effectively reduce longitudinal relaxation time T1 and provide signal enhancement in MRI. Using in vivo, chicken embryos, direct visualization of ND is demonstrated as a bright signal with high contrast to noise ratio. At 24 h following intravascular application marked signal enhancement is noticed in the liver and the kidneys, suggesting uptake by the phagocytic cells of the reticuloendothelial system (RES), and in vivo labeling of these cells. This is confirmed by visualization of nanodiamond-labeled macrophages as positive (bright) signal, in vitro. Macrophage cell labeling is not associated with significant increase in pro-inflammatory cytokines or marked cytotoxicity. These results indicate nanodiamond as a novel gadolinium-free contrast-enhancing agent with potential for cell labeling and tracking and over periods of time. The presence of paramagnetic centers in nanodiamonds drives effective reduction in longitudinal relaxation time (T1) and relaxation of neighboring water molecules, resulting in bright appearance on T1-weighted magnetic resonance images. , Using in vivo chicken embryos, it is confirmed nanodiamonds can provide high contrast to noise ratio for tracking and cell labeling over periods of time using magnetic resonance imaging (MRI).Publication Metadata only Size-dependent locomotion ability of surface microrollers on physiologically relevant microtopographical surfaces(Wiley-V C H Verlag Gmbh, 2023) Bozuyuk, Ugur; Yildiz, Erdost; Han, Mertcan; Demir, Sinan Ozgun; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineControlled microrobotic navigation inside the body possesses significant potential for various biomedical engineering applications. Successful application requires considering imaging, control, and biocompatibility. Interaction with biological environments is also a crucial factor in ensuring safe application, but can also pose counterintuitive hydrodynamic barriers, limiting the use of microrobots. Surface rolling microrobots or surface microrollers is a robust microrobotic platform with significant potential for various applications; however, conventional spherical microrollers have limited locomotion ability over biological surfaces due to microtopography effects resulting from cell microtopography in the size range of 2-5 & mu;m. Here, the impact of the microtopography effect on spherical microrollers of different sizes (5, 10, 25, and 50 & mu;m) is investigated using computational fluid dynamics simulations and experiments. Simulations revealed that the microtopography effect becomes insignificant for increasing microroller sizes, such as 50 & mu;m. Moreover, it is demonstrated that 50 & mu;m microrollers exhibited smooth locomotion ability on in vitro cell layers and inside blood vessels of a chicken embryo model. These findings offer rational design principles for surface microrollers for their potential practical biomedical applications.Publication Metadata only Bioinspired microstructured adhesives with facile and fast switchability for part manipulation in dry and wet conditions(Wiley-V C H Verlag Gmbh, 2023) Pang, Chohei; Kim, Jae-Kang; Wu, Yingdan; Yu, Michael; Yu, Hongyu; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineThe rapid growth in the miniaturized mechanical and electronic devices industry has created the need for temporary attachment systems that can carry out pick-and-place and transfer printing tasks for fragile and tiny parts. Current systems are limited by a fundamental trade-off between adhesive strength and state-changing trigger force, which causes the need for a rapidly switchable adhesive. In this study, an elastomeric microstructure is presented combining a trapezoidal-prism-shaped (TPS) and a mushroom-shaped microstructure, which overcomes the trade-off with the help of the TPS structure. The optimal design exhibits a strong adhesive strength of 87.8 kPa and a negligible detachment strength of <0.07 kPa with a low trigger shear stress of 10.7 kPa on smooth glass surfaces. The large tip-to-stem ratio (50 to 20 mu m) enhances the suction effect, allowing the microstructure to maintain its adhesive performance even in wet conditions. Pick-and-place manipulation tasks of a single and an array of ultralight parts from micrometer to millimeter scales are performed to demonstrate the capability of handling fragile and tiny parts. Moreover, it demonstrates the ability to transfer parts across water and air interfaces. This proposed microstructure offers a facile solution for manipulating microscale fragile parts in dry and wet conditions.Publication Metadata only Artificial-goosebump-driven microactuation(Nature Portfolio, 2024) Zhang, Mingchao; Pal, Aniket; Lyu, Xianglong; Wu, Yingdan; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineMicroactuators provide controllable driving forces for precise positioning, manipulation and operation at the microscale. Development of microactuators using active materials is often hampered by their fabrication complexity and limited motion at small scales. Here we report light-fuelled artificial goosebumps to actuate passive microstructures, inspired by the natural reaction of hair bristling (piloerection) on biological skin. We use light-responsive liquid crystal elastomers as the responsive artificial skin to move three-dimensionally printed passive polymer microstructures. When exposed to a programmable femtosecond laser, the liquid crystal elastomer skin generates localized artificial goosebumps, resulting in precise actuation of the surrounding microstructures. Such microactuation can tilt micro-mirrors for the controlled manipulation of light reflection and disassemble capillary-force-induced self-assembled microstructures globally and locally. We demonstrate the potential application of the proposed microactuation system for information storage. This methodology provides precise, localized and controllable manipulation of microstructures, opening new possibilities for the development of programmable micromachines. Light-induced artificial goosebumps on liquid crystal elastomer skin are used to precisely manipulate passive microstructures, achieving a localized and controllable system for programmable micromachines.