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Permanent URI for this collectionhttps://hdl.handle.net/20.500.14288/3
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Publication Metadata only Mechanical properties of silicon nanowires with native oxide surface state(Elsevier, 2024) Department of Mechanical Engineering; Zarepakzad, Sina; Esfahani, Mohammad Nasr; Alaca, Burhanettin Erdem; Department of Mechanical Engineering; n2STAR-Koç University Nanofabrication and Nanocharacterization Center for Scientifc and Technological Advanced Research; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; College of EngineeringSilicon nanowires have attracted considerable interest due to their wide-ranging applications in nanoelectromechanical systems and nanoelectronics. Molecular dynamics simulations are powerful tools for studying the mechanical properties of nanowires. However, these simulations encounter challenges in interpreting the mechanical behavior and brittle to ductile transition of silicon nanowires, primarily due to surface effects such as the assumption of an unreconstructed surface state. This study specifically focuses on the tensile deformation of silicon nanowires with a native oxide layer, considering critical parameters such as cross-sectional shape, length -to -critical dimension ratio, temperature, the presence of nano -voids, and strain rate. By incorporating the native oxide layer, the article aims to provide a more realistic representation of the mechanical behavior for different critical dimensions and crystallographic orientations of silicon nanowires. The findings contribute to the advancement of knowledge regarding size -dependent elastic properties and strength of silicon nanowires.Publication Metadata only Objective-free ultrasensitive biosensing on large-area metamaterial surfaces in the near-IR(AMER CHEMICAL SOC, 2024) Department of Physics; Ramazanoğlu, Serap Aksu; Öktem, Evren; Department of Physics; College of Sciences; Graduate School of Sciences and EngineeringPlasmonic metamaterials have opened new avenues in medical diagnostics. However, the transfer of the technology to the markets has been delayed due to multiple challenges. The need of bulky optics for signal reading from nanostructures patterned on submillimeter area limits the miniaturization of the devices. The use of objective-free optics can solve this problem, which necessitates large area patterning of the nanostructures. In this work, we utilize laser interference lithography (LIL) to pattern nanodisc-shaped metamaterial absorber nanoantennas over a large area (4 cm(2)) within minutes. The introduction of a sacrificial layer during the fabrication process enables an inverted hole profile and a well-controlled liftoff, which ensures perfectly defined uniform nanopatterning almost with no defects. Furthermore, we use a macroscopic reflection probe for optical characterization in the near-IR, including the detection of the binding kinematics of immunologically relevant proteins. We show that the photonic quality of the plasmonic nanoantennas commensurates with electron-beam-lithography-fabricated ones over the whole area. The refractive index sensitivity of the LIL-fabricated metasurface is determined as 685 nm per refractive index unit, which demonstrates ultrasensitive detection. Moreover, the fabricated surfaces can be used multiple times for biosensing without losing their optical quality. The combination of rapid and large area nanofabrication with a simple optical reading not only simplifies the detection process but also makes the biosensors more environmentally friendly and cost-effective. Therefore, the improvements provided in this work will empower researchers and industries for accurate and real-time analysis of biological systems.Publication Metadata only Solar-light-driven photocatalytic hydrogen evolution activity of gCN/WS2 heterojunctions incorporated with the first-row transition metals(Elsevier Science Sa, 2023) Acar, Eminegul Genc; Aslan, Emre; Patir, Imren Hatay; Department of Chemistry; Yılmaz, Seda; Eroğlu, Zafer; Metin, Önder; Department of Chemistry; Koç University Tüpraş Energy Center (KUTEM) / Koç Üniversitesi Tüpraş Enerji Merkezi (KÜTEM); Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; College of SciencesThe design of semiconductor-based heterojunctions is an effective strategy to build highly active photo-catalyst systems. In this study, tungsten disulfide (WS2) modified graphitic carbon nitride (gCN) hetero-junction (gCN/WS2) is incorporated with Co and Ni (gCN/WS2-Co and gCN/WS2-Ni) to enhance the photocatalytic hydrogen evolution reaction (HER) activity of gCN/WS2 via performing a chemical reduction method and characterized by advanced analytical techniques. The photocatalytic HER activities of gCN, gCN/ WS2, gCN/WS2-Ni and gCN/WS2-Co were measured as 0.126, 0.221, 0.237 and 0.249 mmol g-1h-1, respec-tively, under the visible light irradiation. The improvement of photocatalytic activity and stability of gCN/ WS2-Ni and gCN/WS2-Co nanocomposites could be attributed to the 2D/2D heterojunction structure, ex-tended light harvesting ability, increased electron-hole lifetime and decreased recombination rate of the charge carriers. Moreover, mechanistic studies revealed that a S-scheme heterojunction is attributed to the enhanced photocatalytic HER by the gCN/WS2-Ni and gCN/WS2-Co photocatalysts, which provides pro-moted efficiency by photocarrier transfer and separation.Publication Metadata only Meso-2,3-dimercaptosuccinic acid-based macromers for ph-sensitive degradable hydrogelsa(Amer Chemical Soc, 2023) Guven, Melek Naz; Demirci, Gozde; Avci, Duygu; Department of Chemistry; Acar, Havva Funda Yağcı; Department of Chemistry; College of SciencesOne way of tailoring the properties of hydrogels is using functional cross-linkers. In this study, four highly watersoluble and degradable carboxylated diacrylate and diacrylamide macromeric cross-linkers were designed as precursors to prepare pH-sensitive and degradable hydrogels. The macromers were synthesized from thiol-Michael addition reaction of meso-2,3dimercaptosuccinic acid (DMSA) with poly(ethylene glycol) diacrylate (PEGDA, M-n = 575 g/mol) or N,N '-methylene bis(acrylamide) (MBA) in the presence of triethyl amine or sodium hydroxide. They were used as cross-linkers in fabrication of 2-hydroxyethyl methacrylate (HEMA)-based hydrogels, whose swelling strongly depended on pH, macromer structure, and hydrogel composition. The degradabilities of the hydrogels were greatly enhanced by increasing the concentration of the cross-linkers. The mechanical properties of the hydrogels can be tuned by tailoring the cross-linking macromer. The hydrogels were proven to have metal chelating ability in the context of Fe3+ ions, and upon this chelation, Young's modulus was also observed to increase significantly. In vitro cytotoxicity evaluations against U-2 OS human bone osteosarcoma epithelial cells and C2C12 mouse myoblast cells showed that the PEGDA functional macromers are not toxic.Publication Metadata only Bulk MgB2 superconductor for levitation applications fabricated with boron processed by different routes(Elsevier Science Sa, 2023) Savaskan, B.; Ozturk, U. K.; Guner, S. B.; Abdioglu, M.; Bahadir, M. V.; Acar, S.; Ionescu, A. M.; Locovei, C.; Enculescu, M.; Badica, P.; Department of Chemistry; Somer, Mehmet Suat; Department of Chemistry; College of SciencesBulk MgB2 discs were prepared by an in situ route from mixtures of magnesium and boron powders. The boron powders were produced by two methods. The first one consisted of a self-propagating high tem-perature magnesiothermic synthesis (SHS) process followed by acid and fluorine cleaning and a heat treatment in inert atmosphere. This approach produced boron with purities between 86 % and 97 %, where the main impurity was Mg. Depending on the final heat treatment, these boron powders were amorphous or crystalline. In the second route, high purity nano powders (99 %) of boron were obtained by a diborane pyrolysis process. Bulks of MgB2 were characterized by structural, microstructural, and magnetic mea-surements. Critical current density, pinning force aspects and levitation force (including guiding force) details were assessed. Amorphous lower purity boron (86-97 %) obtained by the first processing route was found to promote the largest levitation forces of the MgB2 bulks and, among these samples, the best le-vitation results were recorded when using boron with a purity of 95-97 %. Use of a lower purity boron that decreases the cost of MgB2 promotes large scale production at industrial level of bulk MgB2 super-conducting magnets for levitation applications and enhances the applicability potential of MgB2 super-conductor. The relationship between levitation force and specific features of the samples such as pinning force details are discussed.Publication Metadata only Liquid metal microdroplet-initiated ultra-fast polymerization of a stimuli-responsive hydrogel composite(Wiley-V C H Verlag Gmbh, 2023) Zhang, Jianhua; Liao, Jiahe; Liu, Zemin; Zhang, Rongjing; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineRecent advances in composite hydrogels achieve material enhancement or specialized stimuli-responsive functionalities by pairing with a functional filler. Liquid metals (LM) offer a unique combination of chemical, electrical, and mechanical properties that show great potential in hydrogel composites. Polymerization of hydrogels with LM microdroplets as initiators is a particularly interesting phenomenon that remains in its early stage of development. In this work, an LM-hydrogel composite is introduced, in which LM microdroplets dispersed inside the hydrogel matrix have dual functions as a polymerization initiator for a polyacrylic acid-poly vinyl alcohol (PAA/PVA) network and, once polymerized, as passive inclusion to influence its material and stimuli-responsive characteristics. It is demonstrated that LM microdroplets enable ultra-fast polymerization in approximate to 1 min, compared to several hours by conventional polymerization techniques. The results show several mechanical enhancements to the PAA/PVA hydrogels with LM-initiated polymerization. It is found that LM ratios strongly influence stimuli-responsive behaviors in the hydrogels, including swelling and ionic bending, where higher LM ratios are found to enhance ionic actuation performance. The dual roles of LM in this composite are analyzed using the experimental characterization results. These LM-hydrogel composites, which are biocompatible, open up new opportunities in future soft robotics and biomedical applications. A composite hydrogel embedded with liquid metal (LM) microdroplets is introduced, where the LM microdroplets have dual roles of initiating ultra-fast polymerization and passive inclusion. The physical effects of LM on polymerization and stimuli-responsive behaviors are analyzed, including swelling and ionic actuation due to osmotic pressure differences. Their benefits to the LM-hydrogel functionalities, such as robot locomotion, are demonstrated.Publication Metadata only Machine learning-based shear optimal adhesive microstructures with experimental validation(Wiley-V C H Verlag Gmbh, 2023) Dayan, Cem Balda; Son, Donghoon; Aghakhani, Amirreza; Wu, Yingdan; Demir, Sinan Ozgun; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineBioinspired fibrillar structures are promising for a wide range of disruptive adhesive applications. Especially micro/nanofibrillar structures on gecko toes can have strong and controllable adhesion and shear on a wide range of surfaces with residual-free, repeatable, self-cleaning, and other unique features. Synthetic dry fibrillar adhesives inspired by such biological fibrils are optimized in different aspects to increase their performance. Previous fibril designs for shear optimization are limited by predefined standard shapes in a narrow range primarily based on human intuition, which restricts their maximum performance. This study combines the machine learning-based optimization and finite-element-method-based shear mechanics simulations to find shear-optimized fibril designs automatically. In addition, fabrication limitations are integrated into the simulations to have more experimentally relevant results. The computationally discovered shear-optimized structures are fabricated, experimentally validated, and compared with the simulations. The results show that the computed shear-optimized fibrils perform better than the predefined standard fibril designs. This design optimization method can be used in future real-world shear-based gripping or nonslip surface applications, such as robotic pick-and-place grippers, climbing robots, gloves, electronic devices, and medical and wearable devices. This study combines the machine learning-based optimization and finite-element-method-based shear mechanics simulations to find shear-optimized fibril designs automatically. The results show that the computed optimal fibrils perform better than the predefined standard fibril designs. This design optimization framework can be used in future nonslip surface applications in grippers, robots, gloves, and electronic, medical, and wearable devices.Publication Metadata only Magnetic putty as a reconfigurable, recyclable, and accessible soft robotic material(Wiley-V C H Verlag Gmbh, 2023) Li, Meng; Pal, Aniket; Byun, Junghwan; Gardi, Gaurav; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineMagnetically hard materials are widely used to build soft magnetic robots, providing large magnetic force/torque and macrodomain programmability. However, their high magnetic coercivity often presents practical challenges when attempting to reconfigure magnetization patterns, requiring a large magnetic field or heating. In this study, magnetic putty is introduced as a magnetically hard and soft material with large remanence and low coercivity. It is shown that the magnetization of magnetic putty can be easily reoriented with maximum magnitude using an external field that is only one-tenth of its coercivity. Additionally, magnetic putty is a malleable, autonomous self-healing material that can be recycled and repurposed. The authors anticipate magnetic putty could provide a versatile and accessible tool for various magnetic robotics applications for fast prototyping and explorations for research and educational purposes. Permanent magnetic particles embedded in a viscoelastic putty matrix result in a self-healing soft magnetic material with both high remanence and low coercivity, providing hard-magnetic performance without the need for inaccessible strong magnetic fields. Programmable and reconfigurable magnetization, frequency-dependent force output, and easy to shape and assemble, magnetic putty can be a versatile tool in research prototyping and inspire future explorations.Publication Metadata only Nanodiamond-enhanced magnetic resonance imaging(Wiley-V C H Verlag Gmbh, 2023) Lazovic, Jelena; Goering, Eberhard; Wild, Anna-Maria; Schuetzenduebe, Peter; Shiva, Anitha; Loeffler, Jessica; Winter, Gordon; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineNanodiamonds (ND) hold great potential for diverse applications due to their biocompatibility, non-toxicity, and versatile functionalization. Direct visualization of ND by means of non-invasive imaging techniques will open new venues for labeling and tracking, offering unprecedented and unambiguous detection of labeled cells or nanodiamond-based drug carrier systems. The structural defects in diamonds, such as vacancies, can have paramagnetic properties and potentially act as contrast agents in magnetic resonance imaging (MRI). The smallest nanoscale diamond particles, detonation ND, are reported to effectively reduce longitudinal relaxation time T1 and provide signal enhancement in MRI. Using in vivo, chicken embryos, direct visualization of ND is demonstrated as a bright signal with high contrast to noise ratio. At 24 h following intravascular application marked signal enhancement is noticed in the liver and the kidneys, suggesting uptake by the phagocytic cells of the reticuloendothelial system (RES), and in vivo labeling of these cells. This is confirmed by visualization of nanodiamond-labeled macrophages as positive (bright) signal, in vitro. Macrophage cell labeling is not associated with significant increase in pro-inflammatory cytokines or marked cytotoxicity. These results indicate nanodiamond as a novel gadolinium-free contrast-enhancing agent with potential for cell labeling and tracking and over periods of time. The presence of paramagnetic centers in nanodiamonds drives effective reduction in longitudinal relaxation time (T1) and relaxation of neighboring water molecules, resulting in bright appearance on T1-weighted magnetic resonance images. , Using in vivo chicken embryos, it is confirmed nanodiamonds can provide high contrast to noise ratio for tracking and cell labeling over periods of time using magnetic resonance imaging (MRI).Publication Metadata only Size-dependent locomotion ability of surface microrollers on physiologically relevant microtopographical surfaces(Wiley-V C H Verlag Gmbh, 2023) Bozuyuk, Ugur; Yildiz, Erdost; Han, Mertcan; Demir, Sinan Ozgun; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineControlled microrobotic navigation inside the body possesses significant potential for various biomedical engineering applications. Successful application requires considering imaging, control, and biocompatibility. Interaction with biological environments is also a crucial factor in ensuring safe application, but can also pose counterintuitive hydrodynamic barriers, limiting the use of microrobots. Surface rolling microrobots or surface microrollers is a robust microrobotic platform with significant potential for various applications; however, conventional spherical microrollers have limited locomotion ability over biological surfaces due to microtopography effects resulting from cell microtopography in the size range of 2-5 & mu;m. Here, the impact of the microtopography effect on spherical microrollers of different sizes (5, 10, 25, and 50 & mu;m) is investigated using computational fluid dynamics simulations and experiments. Simulations revealed that the microtopography effect becomes insignificant for increasing microroller sizes, such as 50 & mu;m. Moreover, it is demonstrated that 50 & mu;m microrollers exhibited smooth locomotion ability on in vitro cell layers and inside blood vessels of a chicken embryo model. These findings offer rational design principles for surface microrollers for their potential practical biomedical applications.