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Permanent URI for this collectionhttps://hdl.handle.net/20.500.14288/3
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Publication Metadata only Liquid metal microdroplet-initiated ultra-fast polymerization of a stimuli-responsive hydrogel composite(Wiley-V C H Verlag Gmbh, 2023) Zhang, Jianhua; Liao, Jiahe; Liu, Zemin; Zhang, Rongjing; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineRecent advances in composite hydrogels achieve material enhancement or specialized stimuli-responsive functionalities by pairing with a functional filler. Liquid metals (LM) offer a unique combination of chemical, electrical, and mechanical properties that show great potential in hydrogel composites. Polymerization of hydrogels with LM microdroplets as initiators is a particularly interesting phenomenon that remains in its early stage of development. In this work, an LM-hydrogel composite is introduced, in which LM microdroplets dispersed inside the hydrogel matrix have dual functions as a polymerization initiator for a polyacrylic acid-poly vinyl alcohol (PAA/PVA) network and, once polymerized, as passive inclusion to influence its material and stimuli-responsive characteristics. It is demonstrated that LM microdroplets enable ultra-fast polymerization in approximate to 1 min, compared to several hours by conventional polymerization techniques. The results show several mechanical enhancements to the PAA/PVA hydrogels with LM-initiated polymerization. It is found that LM ratios strongly influence stimuli-responsive behaviors in the hydrogels, including swelling and ionic bending, where higher LM ratios are found to enhance ionic actuation performance. The dual roles of LM in this composite are analyzed using the experimental characterization results. These LM-hydrogel composites, which are biocompatible, open up new opportunities in future soft robotics and biomedical applications. A composite hydrogel embedded with liquid metal (LM) microdroplets is introduced, where the LM microdroplets have dual roles of initiating ultra-fast polymerization and passive inclusion. The physical effects of LM on polymerization and stimuli-responsive behaviors are analyzed, including swelling and ionic actuation due to osmotic pressure differences. Their benefits to the LM-hydrogel functionalities, such as robot locomotion, are demonstrated.Publication Metadata only Hydrogel muscles powering reconfigurable micro-metastructures with wide-spectrum programmability(Nature Portfolio, 2023) Zhang, Mingchao; Pal, Aniket; Zheng, Zhiqiang; Gardi, Gaurav; Yildiz, Erdost; Department of Mechanical Engineering; Sitti, Metin; Department of Mechanical Engineering; College of Engineering; School of MedicineStimuli-responsive geometric transformations endow metamaterials with dynamic properties and functionalities. However, using existing transformation mechanisms to program a single geometry to transform into diverse final configurations remains challenging, imposing crucial design restrictions on achieving versatile functionalities. Here, we present a programmable strategy for wide-spectrum reconfigurable micro-metastructures using linearly responsive transparent hydrogels as artificial muscles. Actuated by the hydrogel, the transformation of micro-metastructures arises from the collaborative buckling of their building blocks. Rationally designing the three-dimensional printing parameters and geometry features of the metastructures enables their locally isotropic or anisotropic deformation, allowing controllable wide-spectrum pattern transformation with programmable chirality and optical anisotropy. This reconfiguration mechanism can be applied to various materials with a wide range of mechanical properties. Our strategy enables a thermally reconfigurable printed metalattice with pixel-by-pixel mapping of different printing powers and angles for displaying or hiding complex information, providing opportunities for encryption, miniature robotics, photonics and phononics applications. It is difficult to program a single stimuli-responsive geometry to transform into diverse final configurations in a systematic manner. Here, linearly responsive transparent hydrogels are developed to create micro-metastructures with wide-spectrum thermal reconfigurability.Publication Metadata only Novel nanostructured composites of silica aerogels with a metal organic framework(Elsevier, 2013) N/A; N/A; Department of Chemical and Biological Engineering; Department of Chemical and Biological Engineering; Ülker, Zeynep; Eruçar, İlknur; Keskin, Seda; Erkey, Can; PhD Student; PhD Student; Faculty Member; Faculty Member; Department of Chemical and Biological Engineering; Koç University Tüpraş Energy Center (KUTEM) / Koç Üniversitesi Tüpraş Enerji Merkezi (KÜTEM); Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; College of Engineering; College of Engineering; 262388; 260094; 40548; 29633Novel nanostructured composites of silica aerogel with Cu-BTC were synthesized using a slightly modified version of the conventional sol-gel method used to synthesize silica aerogels. The composite materials had monolithic structures with blue color consisting of well dispersed microporous domains of Cu-BTC in the mesoporous inorganic silica aerogel network. The Cu-BTC content in the composites ranged from 5 to 30 weight percent and the total surface area of the composites ranged from 1025 to 1138 m(2)/g. The microporosity of the composites increased with the increasing amount of Cu-BTC indicating that the micropores of Cu-BTC were accessible and functional. XRD analysis indicated that Cu-BTC retained its crystal structure in the composite despite being immersed in a solution containing water, ethanol and tetraethylorthosilicate. Additionally, it was observed that increasing Cu-BTC content caused a decrease in the average desorption pore radius with a wider pore size distribution. Nitrogen adsorption isotherms for composites could be predicted using the experimentally obtained pure component isotherm for the silica aerogel, theoretically obtained isotherm for Cu-BTC and the weight fractions of the components within the composite material.Publication Metadata only Molecular modeling of mof-based mixed matrix membranes(Bentham Science Publ Ltd, 2014) N/A; Department of Chemical and Biological Engineering; Eruçar, İlknur; Keskin, Seda; PhD Student; Faculty Member; Department of Chemical and Biological Engineering; Graduate School of Sciences and Engineering; College of Engineering; 260094; 40548Metal organic framework (MOF)-based mixed matrix membranes (MMMs) have received significant attention in the last couple of years due to their high gas permeabilities and high gas selectivities compared to pure polymeric membranes in various gas separation applications. Computational methods that can predict the gas separation performances of MOF-based MMMs are highly valuable since experimental screening of these MMMs is not practical given the very large number of combination of MOFs and polymers. In this review, molecular modeling methods and theoretical permeation models that have been used to assess the gas separation performance of MOF-based MMMs are discussed; opportunities and challenges in modeling of MOF/polymer membranes are addressed.Publication Metadata only Adsorption, folding, and packing of an amphiphilic peptide at the air/water interface(amer Chemical Soc, 2012) N/A; Department of Mechanical Engineering; Engin, Özge; Sayar, Mehmet; Master Student; Faculty Member; Department of Mechanical Engineering; Graduate School of Sciences and Engineering, College of Engineering; N/A; 109820Peptide oligomers play an essential role as model compounds for identifying key motifs in protein structure formation and protein aggregation. Here, we present our results, based on extensive molecular dynamics simulations, on adsorption, folding, and packing within a surface monolayer of an amphiphilic peptide at the air/water interface. Experimental results suggest that these molecules spontaneously form ordered monolayers at the interface, Adopting a beta-hairpin-like structure within the surface layer. Our results reveal that the beta-hairpin structure can be observed both in bulk and at the air/water interface. However, the presence of an interface leads to ideal partitioning of the hydrophobic and hydrophilic residues, and therefore reduces the conformational space for the molecule and increases the stability of the hairpin structure. We obtained the adsorption free energy of a single beta-hairpin at the air/water interface, and analyzed the enthalpic and entropic contributions. the adsorption process is favored by two main factors: (1) Free-energy reduction due to desolvation of the hydrophobic side chains of the peptide and release of the water molecules which form a cage around these hydrophobic groups in bulk water. (2) Reduction of the total air/water contact area at the interface upon adsorption of the peptide amphiphile. By performing mutations on the original molecule, we demonstrated the relative role of key design features of the peptide. Finally, by analyzing the potential of mean force among two peptides at the interface, we investigated possible packing mechanisms for these molecules within the surface monolayer.Publication Metadata only Multiscale dynamics of lipid vesicles in polymeric microenvironment(Mdpi, 2022) N/A; N/A; N/A; N/A; N/A; Department of Electrical and Electronics Engineering; Department of Chemical and Biological Engineering; Department of Chemical and Biological Engineering; Karaz, Selcan; Han, Mertcan; Akay, Gizem; Önal, Asım; Nizamoğlu, Sedat; Kızılel, Seda; Şenses, Erkan; Master Student; Master Student; PhD Student; PhD Student; Faculty Member; Faculty Member; Faculty Member; Department of Electrical and Electronics Engineering; Department of Chemical and Biological Engineering; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; College of Engineering; College of Engineering; College of Engineering; N/A; N/A; N/A; N/A; 130295; 28376; 280298Understanding dynamic and complex interaction of biological membranes with extracellular matrices plays a crucial role in controlling a variety of cell behavior and functions, from cell adhesion and growth to signaling and differentiation. Tremendous interest in tissue engineering has made it possible to design polymeric scaffolds mimicking the topology and mechanical properties of the native extracellular microenvironment; however, A fundamental question remains unanswered: that is, how the viscoelastic extracellular environment modifies the hierarchical dynamics of lipid membranes. in this work, we used aqueous solutions of poly(ethylene glycol) (PEG) with different molecular weights to mimic the viscous medium of cells and nearly monodisperse unilamellar DMPC/DMPG liposomes as a membrane model. Using small-angle X-ray scattering (SaXS), dynamic light scattering, temperature-modulated differential scanning calorimetry, bulk rheology, and fluorescence lifetime spectroscopy, we investigated the structural phase map and multiscale dynamics of the liposome-polymer mixtures. the results suggest an unprecedented dynamic coupling between polymer chains and phospholipid bilayers at different length/time scales. the microviscosity of the lipid bilayers is directly influenced by the relaxation of the whole chain, resulting in accelerated dynamics of lipids within the bilayers in the case of short chains compared to the polymer-free liposome case. at the macroscopic level, the gel-to-fluid transition of the bilayers results in a remarkable thermal-stiffening behavior of polymer-liposome solutions that can be modified by the concentration of the liposomes and the polymer chain length.Publication Metadata only An ultra-compact and wireless tag for battery-free sweat glucose monitoring(Elsevier Advanced Technology, 2022) N/A; Department of Mechanical Engineering; N/A; N/A; Department of Mechanical Engineering; N/A; N/A; N/A; N/A; Department of Mechanical Engineering; Mirzajani, Hadi; Abbasiasl, Taher; Mirlou, Fariborz; İstif, Emin; Bathaei, Mohammad Javad; Dağ, Çağdaş; Deyneli, Oğuzhan; Dereli, Dilek Yazıcı; Beker, Levent; Researcher; PhD Student; PhD Student; Other; PhD Student; Faculty Member; Faculty Member; Faculty Member; Faculty Member; Department of Mechanical Engineering; Koç Üniversitesi İş Bankası Enfeksiyon Hastalıkları Uygulama ve Araştırma Merkezi (EHAM) / Koç University İşbank Center for Infectious Diseases (KU-IS CID); n2STAR-Koç University Nanofabrication and Nanocharacterization Center for Scientifc and Technological Advanced Research; Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM); College of Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; College of Engineering; Graduate School of Sciences and Engineering; N/A; School of Medicine; School of Medicine; College of Engineering; N/A; N/A; N/A; N/A; N/A; N/A; 171914; 179659; 308798Glucose monitoring before, during, and after exercise is essential for people with diabetes as exercise increases the risk of activity-induced hyper- and hypo-glycemic events. The situation is even more challenging for athletes with diabetes as they have impaired metabolic control compared to sedentary individuals. In this regard, a compact and noninvasive wearable glucose monitoring device that can be easily worn is critical to enabling glucose monitoring. This report presents an ultra-compact glucose tag with a footprint and weight of 1.2 cm(2) and 0.13 g, respectively, for sweat analysis. The device comprises a near field communication (NFC) chip, antenna, electrochemical sensor, and microfluidic channels implemented in different material layers. The device has a flexible and conformal structure and can be easily attached to different body parts. The battery-less operation of the device was enabled by NFC-based wireless power transmission and the compact antenna. Femtosecond laser ablation was employed to fabricate a highly compact and flexible NFC antenna. The proposed device demonstrated excellent operating characteristics with a limit of detection (LOD), limit of quantification (LOQ), and sensitivity of 24 mu M, 74 mu M, and 1.27 mu A cm(-2) mM(-1), respectively. The response of the proposed sensor in sweat glucose detection and quantification was validated by nuclear magnetic resonance spectroscopy (NMR). Also, the device's capability in attachment to the body, sweat collection, and glucose measurement was demonstrated through in vitro and in vivo experiments, and satisfactory results were obtained.Publication Metadata only Experimental and theoretical investigation of supercritical drying of silica alcogels(Elsevier Science Bv, 2015) N/A; N/A; Department of Chemical and Biological Engineering; Özbakır, Yaprak; Erkey, Can; PhD Student; Faculty Member; Department of Chemical and Biological Engineering; Graduate School of Sciences and Engineering; College of Engineering; N/AExtraction of ethanol from pores of cylindrical silica alcogel samples using supercritical CO2 (scCO(2)) in a tubular extraction vessel was investigated both by experiments and simulations. Partial differential equations representing mass transfer within the cylindrical silica alcogel phase and in the external scCO(2) phase were developed and solved using finite difference method. the percent removal data as a function of time were found to be in good agreement with model results using mass transfer coefficients regressed from the experimental data. the mass transfer coefficients were found to be higher by about a factor of three from two of the correlations tested which were developed for supercritical extraction. Effect of scCO(2) flow rate on the drying was investigated through experiments and simulations. increasing flow rate led to a decrease in effluent concentration at a specific time but did not significantly affect rate of extraction of ethanol. Effects of the magnitude of the effective diffusion coefficient and alcogel thickness on drying were investigated through simulations. Drying time of the alcogel decreased with decreasing gel thickness and increasing effective diffusion coefficient.