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Publication Open Access A high-performance metal-free hydrogen-evolution reaction electrocatalyst from bacterium derived carbon(Royal Society of Chemistry (RSC), 2015) Wei, Li; Karahan, Hüseyin Enis; Goh, Kunli; Jiang, Wenchao; Yu, Dingshan; Jiang, Rongrong; Chen, Yuan; Department of Chemistry; Birer, Özgür; Researcher; Department of Chemistry; College of SciencesWe report a sustainable approach to obtain carbon materials with nitrogen and phosphorus dual functionalities from a common bacterium strain (S. aureus) as a highly efficient hydrogen-evolution reaction (HER) catalyst. With mesoporous structure introduced by ZnCl2 salt and cathodic activation, it demonstrates an onset overpotential as low as 76 mV, a Tafel slope of 58.4 mV dec(-1) and a large normalized exchange current density of 1.72 x 10(-2) mA cm(-2), which are comparable to those of hitherto best metal-free and well-fabricated metallic HER catalystsPublication Open Access A near-infrared benzothiazole-based chemodosimeter for rapid and selective detection of hydrogen sulfide(Turkish Chemical Society / Türkiye Kimya Derneği, 2021) Department of Chemistry; Kölemen, Safacan; Faculty Member; Department of Chemistry; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Koç University Boron and Advanced Materials Application and Research Center (KUBAM) / Koç Üniversitesi Bor ve İleri Malzemeler Uygulama ve Araştırma Merkezi (KUBAM); College of Sciences; 272051Hydrogen sulfide (H2S) is a biologically relevant gaseous molecule, which involves in a wide variety of physiological and pathological processes. Thus, detection of H2S is highly valuable in order to clarify its complex roles. In this study, a new benzothiazole-based donor-acceptor type H 2S selective chemodosimeter (HP-1) was synthesized and its H2S detection capabilities were investigated in aqueous solutions. HP-1 exhibited a red-shifted absorption signal at 530 nm and a near-infrared (NIR) fluorescence peak at 680 nm as a result of enhanced intramolecular charge transfer (ICT) in the presence of H2S, which enabled a selective and very rapid ratiometric fluorescent detection. HP-1 was also showed to be highly sensitive toward H2S with a very low limit of detection value.Publication Open Access A new class of porous materials for efficient CO2 separation: ionic liquid/graphene aerogel composites(Elsevier, 2021) Department of Chemical and Biological Engineering; N/A; Department of Chemistry; Zeeshan, Muhammad; Yalçın, Kaan; Keskin, Seda; Uzun, Alper; Öztuna, Feriha Eylül Saraç; Ünal, Uğur; PhD Student; Faculty Member; Faculty Member; Department of Chemical and Biological Engineering; Department of Chemistry; Koç University Tüpraş Energy Center (KUTEM) / Koç Üniversitesi Tüpraş Enerji Merkezi (KÜTEM); Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; College of Engineering; College of Sciences; N/A; N/A; 40548; 59917; N/A; 42079Here, we report a new post-synthesis modification strategy for functionalizing reduced graphene aerogels (rGAs) towards an exceptional CO2 separation performance. 1-N-butyl-3-methylimidazolium hexafluorophosphate ([BMIM][PF6]) was impregnated on a rGA, prepared by reducing GA at 700 degrees C, at various ionic liquid (IL) loadings of 5, 10, 30, and 50 wt%. The resulting composites were characterized in deep detail by X-ray photoelectron spectroscopy, X-ray diffraction, N-2 physical adsorption measurements, scanning electron microscopy, Fourier transform infrared and Raman spectroscopies, and thermogravimetric analysis. Results indicated the presence of interactions between the rGA surface and the anion of the IL, potentially improving the CO2 affinity. Volumetric gas adsorption measurements using these materials showed that the deposition of [BMIM][PF6] on rGA surface at an IL loading of 50 wt% boosts the CO2/CH4 selectivity by more than 20-times, exceeding an absolute value of 120, a remarkably higher CO2/CH4 selectivity compared to that of other functionalized materials under similar operating conditions. Tunability of both the IL structure and the surface characteristics of rGA offer a tremendous degree of flexibility for the rational design of these IL/rGA composites towards high performance in gas separation applications.Publication Open Access A new type of microphotoreactor with integrated optofluidic waveguide based on solid-air nanoporous aerogels(Royal Society of Chemistry (RSC), 2018) Jonas, Alexandr; Department of Chemistry; Department of Electrical and Electronics Engineering; Department of Physics; Özbakır, Yaprak; Erkey, Can; Kiraz, Alper; PhD Student; Faculty Member; Faculty Member; Department of Chemistry; Department of Electrical and Electronics Engineering; Department of Physics; College of Engineering; College of Sciences; N/A; 29633; 22542In this study, we developed a new type of microphotoreactor based on an optofluidic waveguide with aqueous liquid core fabricated inside a nanoporous aerogel. To this end, we synthesized a hydrophobic silica aerogel monolith with a density of 0.22 g cm(-3) and a low refractive index of 1.06 that-from the optical point of view-effectively behaves like solid air. Subsequently, we drilled an L-shaped channel within the monolith that confined both the aqueous core liquid and the guided light, the latter property arising due to total internal reflection of light from the liquid-aerogel interface. We characterized the efficiency of light guiding in liquid-filled channel and-using the light delivered by waveguiding-we carried out photochemical reactions in the channel filled with aqueous solutions of methylene blue dye. We demonstrated that methylene blue could be efficiently degraded in the optofluidic photoreactor, with conversion increasing with increasing power of the incident light. The presented optofluidic microphotoreactor represents a versatile platform employing light guiding concept of conventional optical fibres for performing photochemical reactions.Publication Open Access A young male patient presented with dyspnea, cough, and lilateral pulmonary infiltrations: what is your siagnosis?(Aves, 2016) Department of Chemistry; İliaz, Sinem; Yurtsever, İsmail Ersin; Çağlayan, Benan Niku; Doctor; Department of Chemistry; College of Sciences; Koç University Hospital; 168584; 7129; N/APublication Open Access Ab initio quantum dynamics with very weak van der Waals interactions: structure and stability of small Li-2((1)Sigma(+)(g))-(He)(n) clusters(American Institute of Physics (AIP) Publishing, 2004) Bodo, E.; Sebastianelli, F.; Gianturco, F.A.; Yurtsever, M.; Department of Chemistry; Yurtsever, İsmail Ersin; Faculty Member; Department of Chemistry; College of Sciences; 7129The potential energy surface (PES) for the interaction between Li-2((1)Sigma(g)(+)) and He-4 has been computed using an accurate, post-Hartree-Fock quantum calculation for its ground electronic state. The orientational anisotropy of the forces and the interplay between repulsive and attractive effects within the PES are analyzed to extract information on the possible existence of bound states in the triatomic system. The structures of a few of the Li-2(He)(n) small clusters are examined by comparing a classical approach with a full quantum one to generate bound configurations and to extract information on the possible spatial arrangements of the smaller clusters via a vis the location of the Li-2 dopant. Some significant consequences on the Li-2 behavior in larger clusters and droplets are drawn from the above findings.Publication Open Access Acetic acid conversion to ketene on Cu2O(1 0 0): reaction mechanism deduced from experimental observations and theoretical computations(Elsevier, 2021) Tissot, H.; Halldin Stenlid, J.; Wang, C.; Brinck, T.; Sassa, Y.; Johansson, F. O. L.; Weissenrieder, J.; Department of Chemistry; N/A; Kaya, Sarp; Panahi, Mohammad; Faculty Member; PhD Student; Department of Chemistry; Koç University Tüpraş Energy Center (KUTEM) / Koç Üniversitesi Tüpraş Enerji Merkezi (KÜTEM); College of Sciences; Graduate School of Sciences and Engineering; 116541; N/AKetene, a versatile reagent in production of fine and specialty chemicals, is produced from acetic acid. We investigate the synthesis of ketene from acetic acid over the (3,0;1,1) surface of Cu2O(1 0 0) through analysis of the adsorption and desorption characteristics of formic and acetic acids. The results allow us to establish a reaction mechanism for ketene formation. Observations from x-ray photoelectron spectroscopy (XPS), scanning tunneling microscopy, and temperature programmed desorption (TPD), supported by a comparison with formic acid results, suggest that acetic acid reacts with Cu2O through deprotonation to form acetate species coordinated to copper sites and hydroxylation of nearby surface oxygen sites. For formic acid the decomposition of adsorbed formate species results in desorption of CO2 and CO while, for acetic acid, high yields of ketene are observed at temperature >500 K. Modeling by density functional theory (DFT) confirms the strong interaction of acetic acid with the (3,0;1,1) surface and the spontaneous dissociation into adsorbed acetate and hydrogen atom species, the latter forming an OH-group. In an identified reaction intermediate ketene binds via all C and O atoms to Cu surface sites, in agreement with interpretations from XPS. In the vicinity of the adsorbate the surface experiences a local reorganization into a c(2 × 2) reconstruction. The total computed energy barrier for ketene formation is 1.81 eV in good agreement with the 1.74 eV obtained from TPD analysis. Our experimental observations and mechanistic DFT studies suggests that Cu2O can operate as an efficient catalyst for the green generation of ketene from acetic acid.Publication Open Access Activity-based photosensitizers with optimized triplet state characteristics toward cancer cell selective and image guided photodynamic therapy(American Chemical Society (ACS), 2022) Elmazoğlu, Zübeyir; Kepil, Dilay; Etienne, Thibaud; Marion, Antoine; Günbaş, Görkem; Department of Chemistry; Kılıç, Eda; Almammadov, Toghrul; Kölemen, Safacan; Researcher; Faculty Member; Department of Chemistry; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Koç University Tüpraş Energy Center (KUTEM) / Koç Üniversitesi Tüpraş Enerji Merkezi (KÜTEM); Graduate School of Sciences and Engineering; College of Sciences; N/A; N/A; 272051Activity-based theranostic photosensitizers are highly attractive in photodynarnic therapy as they offer enhanced therapeutic outcome on cancer cells with an imaging opportunity at the same time. However, photosensitizers (PS) cores that can be easily converted to activity-based photosensitizers (aPSs) are still quite limited in the literature. In this study, we modified the dicyanomethylene-4H-chromene (DCM) core with a heavy iodine atom to get two different PSs (DCMo-I, I-DCMo-Cl) that can be further converted to aPS after simple modifications. The effect of iodine positioning on singlet oxygen generation capacity was also evaluated through computational studies. DCMo-I showed better performance in solution experiments and further proved to be a promising phototheranostic scaffold via cell culture studies. Later, a cysteine (Cys) activatable PS based on the DCMo-I core (DCMo-I-Cys) was developed, which induced selective photocytotoxicity along with a fluorescence turn-on response in Cys rich cancer cells.Publication Open Access Al-doped MgB2 materials studied using electron paramagnetic resonance and Raman spectroscopy(American Institute of Physics (AIP) Publishing, 2016) Erdem, Emre; Repp, Sergej; Weber, Stefan; N/A; Department of Chemistry; Bateni, Ali; Somer, Mehmet Suat; PhD Student; Faculty Member; Department of Chemistry; Graduate School of Sciences and Engineering; College of Sciences; N/A; 178882Undoped and aluminum (Al) doped magnesium diboride (MgB2) samples were synthesized using a high-temperature solid-state synthesis method. The microscopic defect structures of Al-doped MgB2 samples were systematically investigated using X-ray powder diffraction, Raman spectroscopy, and electron paramagnetic resonance. It was found that Mg-vacancies are responsible for defect-induced peculiarities in MgB2. Above a certain level of Al doping, enhanced conductive properties of MgB2 disappear due to filling of vacancies or trapping of Al in Mg-related vacancy sites. Published by AIP Publishing.Publication Open Access An in vitro study on the cytotoxicity and genotoxicity of silver sulfide quantum dots coated with meso-2,3-dimercaptosuccinic acid(Galenos Yayınevi, 2019) N/A; Department of Chemistry; Gözüaçık, Devrim; Faculty Member; Department of Chemistry; Graduate School of Sciences and Engineering; College of SciencesObjectives: Silver sulfide (Ag2S) quantum dots (QDs) are highly promising nanomaterials in bioimaging systems due to their high activities for both imaging and drug/gene delivery. There is insufficient research on the toxicity of Ag2S QDs coated with meso-2,3-dimercaptosuccinic acid (DMSA). In this study, we aimed to determine the cytotoxicity of Ag2S QDs coated with DMSA in Chinese hamster lung fibroblast (V79) cells over a wide range of concentrations (5-2000 mu g/mL). Materials and methods: cell viability was determined by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and neutral red uptake (NRU) assays. The genotoxic and apoptotic effects of DMSA/Ag2S QDs were also assessed by comet assay and real-time polymerase chain reaction technique, respectively. Results: cell viability was 54.0 +/- 4.8% and 65.7 +/- 4.1% at the highest dose (2000 mu g/mL) of Ag2S QDs using the MTT and NRU assays, respectively. Although cell viability decreased above 400 mu g/mL (MTT assay) and 800 mu g/mL (NRU assay), DNA damage was not induced by DMSA/Ag2S QDs at the studied concentrations. The mRNA expression levels of p53, caspase-3, cospose-9, Box, Bcl-2, and survivin genes were altered in the cells exposed to 500 and 1000 mu g/mL DMSA/Ag2S QDs. Conclusion: the cytotoxic effects of DMSA/Ag2S QDs may occur at high doses through the apoptotic pathways. However, DMSA/Ag2S QDs appear to be biocompatible at low doses, making them well suited for cell labeling applications. / Amaç: Gümüş sülfür (Ag2 S) kuantum noktaları (QD), hem görüntüleme hem de ilaç/gen hedefleme için büyük aktiviteleri nedeniyle biyo-görüntüleme sisteminde oldukça gelecek vaad eden nanomalzemelerdir. Mezo-2,3-dimerkaptosüksinik asit (DMSA) ile kaplanmış Ag2 S QD’lerin toksisitesi hakkında yeterli çalışma yoktur. Bu çalışmada Çin hamster akciğer fibroblast (V79) hücrelerinde DMSA ile kaplanmış Ag2 S QD’lerin geniş bir konsantrasyon aralığında (5-2000 µg/mL) sitotoksisitesini belirlemeyi amaçladık. Gereç ve yöntemler: hücre canlılığı 3-(4,5-dimetiltiyazol-2-il)-2,5-difeniltetrazolium bromid (MTT) ve nötral kırmız alım (NRU) deneyleri ile belirlendi. DMSA/Ag2 S QD’lerin genotoksik ve apoptotik etkileri sırasıyla komet analizi ve gerçek zamanlı polimeraz zincir reaksiyonu tekniği ile değerlendirildi. Bulgular: Ag2 S QD’lerin en yüksek dozlarında hücre canlılığı MTT ve NRU deneylerinde sırasıyla 54.0±4.8% ve 65.7±4.1% olarak bulundu. Ancak hücre canlılığı 400 µg/mL (MTT deneyi) ve 800 µg/mL (NRU deney) üzerinde azalmıştır. İncelenen konsantrasyonlarda DNA hasarının DMSA/Ag2 S QD’ler tarafından indüklenmediği belirlenmiştir. P53, kaspaz-3, kaspaz-9, Bax, Bcl-2 ve survivin genlerinin mRNA ekspresyon düzeyleri 500 ve 1000 µg/mL DMSA/Ag2 S QD’lere maruz kalan hücrelerde değişmiştir. Sonuç: DMSA/Ag2 S QD’lerin yüksek dozlarda sitotoksik etkilerinin apoptotik yollarla ortaya çıkabileceği görülmektedir. Bununla birlikte, DMSA/ Ag2 S QD’ler, düşük dozlarda biyolojik olarak uyumlu görünmektedir, bu da onları hücre görüntüleme uygulamaları için uygun kılmaktadır.