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Publication Open Access 3D bioprinted organ?on?chips(Wiley, 2022) Mustafaoğlu, Nur; Zhang, Yu Shrike; Department of Mechanical Engineering; N/A; N/A; Dabbagh, Sajjad Rahmani; Sarabi, Misagh Rezapour; Birtek, Mehmet Tuğrul; Taşoğlu, Savaş; Faculty Member; Department of Mechanical Engineering; KU Arçelik Research Center for Creative Industries (KUAR) / KU Arçelik Yaratıcı Endüstriler Uygulama ve Araştırma Merkezi (KUAR); Koç Üniversitesi İş Bankası Yapay Zeka Uygulama ve Araştırma Merkezi (KUIS AI)/ Koç University İş Bank Artificial Intelligence Center (KUIS AI); College of Engineering; Graduate School of Social Sciences and Humanities; Graduate School of Sciences and Engineering; N/A; N/A; N/A; 291971Organ-on-a-chip (OOC) platforms recapitulate human in vivo-like conditions more realistically compared to many animal models and conventional two-dimensional cell cultures. OOC setups benefit from continuous perfusion of cell cultures through microfluidic channels, which promotes cell viability and activities. Moreover, microfluidic chips allow the integration of biosensors for real-time monitoring and analysis of cell interactions and responses to administered drugs. Three-dimensional (3D) bioprinting enables the fabrication of multicell OOC platforms with sophisticated 3D structures that more closely mimic human tissues. 3D-bioprinted OOC platforms are promising tools for understanding the functions of organs, disruptive influences of diseases on organ functionality, and screening the efficacy as well as toxicity of drugs on organs. Here, common 3D bioprinting techniques, advantages, and limitations of each method are reviewed. Additionally, recent advances, applications, and potentials of 3D-bioprinted OOC platforms for emulating various human organs are presented. Last, current challenges and future perspectives of OOC platforms are discussed.Publication Open Access 3D engineered neural co-culture model and neurovascular effects of marine fungi-derived citreohybridonol(American Institute of Physics (AIP) Publishing, 2022) Polat, İrem; Özkaya, Ferhat Can; El-Neketi, Mona; Ebrahim, Weaam; Şengül, Gülgün; Department of Mechanical Engineering; Sokullu, Emel; Sarabi, Misagh Rezapour; Taşoğlu, Savaş; Faculty Member; Faculty Member; Department of Mechanical Engineering; Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM); Koç Üniversitesi İş Bankası Yapay Zeka Uygulama ve Araştırma Merkezi (KUIS AI)/ Koç University İş Bank Artificial Intelligence Center (KUIS AI); KU Arçelik Research Center for Creative Industries (KUAR) / KU Arçelik Yaratıcı Endüstriler Uygulama ve Araştırma Merkezi (KUAR); School of Medicine; Graduate School of Sciences and Engineering; College of Engineering; 163024; N/A; 291971Marine-based biomolecules are emerging metabolites that have gained attention for developing novel biomaterials, drugs, and pharmaceutical in vitro platforms. Here, we developed a 3D engineered neural co-culture model via a 3D prototyped sliding frame-platform for multi-step UV lithography and investigated the neurovascular potential of citreohybridonol in neuroblastoma treatment. Citreohybridonol was isolated from a sponge-derived fungus Penicillium atrovenetum. The model was characterized by Fourier-transform infrared spectroscopy and scanning electron microscopy analysis. Human umbilical cord vein endothelial cells (HUVECs) and neuroblastoma (SH-SY5Y) cell lines were encapsulated in gelatin methacrylate (GelMA) with and without citreohybridonol. The effect of citreohybridonol on the proliferation capacity of cells was assessed via cell viability and immunostaining assays. GelMA and 3D culture characterization indicated that the cells were successfully encapsulated as axenic and mixed with/without citreohybridonol. The cytotoxic test confirmed that the 3D microenvironment was non-toxic for cultural experiments, and it showed the inhibitory effects of citreohybridonol on SH-SY5Y cells and induced the proliferation of HUVECs. Finally, immunohistochemical staining demonstrated that citreohybridonol suppressed SH-SY5Y cells and induced vascularization of HUVECs in mixed 3D cell culture.Publication Open Access 3D printing of elastomeric bioinspired complex adhesive microstructures(Wiley, 2021) Dayan, Cem Balda; Chun, Sungwoo; Krishna Subbaiah, Nagaraj; Drotlef, Dirk Michael; Akolpoğlu, Mükrime Birgül; Department of Mechanical Engineering; Sitti, Metin; Faculty Member; Department of Mechanical Engineering; College of Engineering; School of Medicine; 297104Bioinspired elastomeric structural adhesives can provide reversible and controllable adhesion on dry/wet and synthetic/biological surfaces for a broad range of commercial applications. Shape complexity and performance of the existing structural adhesives are limited by the used specific fabrication technique, such as molding. To overcome these limitations by proposing complex 3D microstructured adhesive designs, a 3D elastomeric microstructure fabrication approach is implemented using two-photon-polymerization-based 3D printing. A custom aliphatic urethane-acrylate-based elastomer is used as the 3D printing material. Two designs are demonstrated with two combined biological inspirations to show the advanced capabilities enabled by the proposed fabrication approach and custom elastomer. The first design focuses on springtail- and gecko-inspired hybrid microfiber adhesive, which has the multifunctionalities of side-surface liquid super-repellency, top-surface liquid super-repellency, and strong reversible adhesion features in a single fiber array. The second design primarily centers on octopus- and gecko-inspired hybrid adhesive, which exhibits the benefits of both octopus- and gecko-inspired microstructured adhesives for strong reversible adhesion on both wet and dry surfaces, such as skin. This fabrication approach could be used to produce many other 3D complex elastomeric structural adhesives for future real-world applications.
Publication Metadata only A comprehensive evaluation of parameters governing the cyclic stability of ultrafine-grained FCC alloys(Elsevier Science Sa, 2011) Niendorf, T.; Maier, H. J.; Department of Mechanical Engineering; Canadinç, Demircan; Faculty Member; Department of Mechanical Engineering; College of Engineering; 23433The current paper presents results of a thorough experimental program undertaken to shed light onto the mechanisms dictating the cyclic stability in ultrafine-grained (UFG) alloys with a face-centered cubic structure. Cyclic deformation responses of several copper- and aluminum-based UFG alloys were investigated and the corresponding microstructural evolutions were analyzed with various microscopy techniques. The important finding is that a larger volume fraction of high-angle grain boundaries and solid solution hardening significantly improve the fatigue performance of these alloys at elevated temperatures and high strain rates, and under large applied strain amplitudes.Publication Metadata only A grid of dielectric sensors to monitor mold filling and resin cure in resin transfer molding(Elsevier Sci Ltd, 2009) N/A; Department of Mechanical Engineering; Yenilmez, Bekir; Sözer, Murat; PhD Student; Faculty Member; Department of Mechanical Engineering; Graduate School of Sciences and Engineering; College of Engineering; N/A; 10357A grid of 50 dielectric sensors has been embedded in the walls of a mold to monitor resin transfer molding (RTM). The capacitance of each sensor increased as resin occupied the space between sensor plates, and it decreased with curing. Monitoring data can be used for process control to prevent dry spots and to determine when to de-mold the part. In previous studies, Skordos et al. [Skordos AA, Karkanas PI, Partridge IK. A dielectric sensor for measuring flow in resin transfer molding. Meas Sci Technol 2000; 11:25-31] used a lineal sensor, Hegg et al. [Hegg MC, Ogale A, Mescher A, Mamishev AV, Minaie B. Remote monitoring of resin transfer molding processes by distributed dielectric sensors. J Compos Mater 2005;39(17)] used three large sensors. As experimentally shown in this study, these lineal or large-plate dielectric sensors may mislead since a sensor measures total fraction of the sensor's plate area occupied by resin but not the resin's whereabouts. To avoid ambiguity and yet maintain detailed monitoring, a sensor grid was made at the projections of embedded orthogonal electrodes. The developed sensor operation system eliminated tedious and costly manufacturing of conventionally shielded separate sensors. The success of the developed sensor system was demonstrated in RTM experiments.Publication Metadata only A microstructure-sensitive model for simulating the impact response of a high-manganese austenitic steel(Asme, 2016) N/A; N/A; Department of Mechanical Engineering; Mirzajanzadeh, Morad; Canadinç, Demircan; PhD Student; Faculty Member; Department of Mechanical Engineering; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; College of Engineering; N/A; 23433Microstructurally informed macroscopic impact response of a high-manganese austenitic steel was modeled through incorporation of the viscoplastic self-consistent (VPSC) crystal plasticity model into the ANSYS LS-DYNA nonlinear explicit finite-element (FE) frame. Voce hardening flow rule, capable of modeling plastic anisotropy in microstructures, was utilized in the VPSC crystal plasticity model to predict the micromechanical response of the material, which was calibrated based on experimentally measured quasi-static uniaxial tensile deformation response and initially measured textures. Specifically, hiring calibrated Voce parameters in VPSC, a modified material response was predicted employing local velocity gradient tensors obtained from the initial FE analyses as a new boundary condition for loading state. The updated micromechanical response of the material was then integrated into the macroscale material model by calibrating the Johnson-Cook (JC) constitutive relationship and the corresponding damage parameters. Consequently, we demonstrate the role of geometrically necessary multi-axial stress state for proper modeling of the impact response of polycrystalline metals and validate the presented approach by experimentally and numerically analyzing the deformation response of the Hadfield steel (HS) under impact loading.Publication Metadata only A new magnetorheological damper for chatter stability of boring tools(Elsevier Science Sa, 2021) N/A; N/A; Department of Chemistry; Department of Mechanical Engineering; Saleh, Mostafa Khalil Abdou; Nejatpour, Mona; Acar, Havva Funda Yağcı; Lazoğlu, İsmail; PhD Student; PhD Student; Faculty Member; Faculty Member; Department of Chemistry; Department of Mechanical Engineering; Manufacturing and Automation Research Center (MARC); Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; College of Sciences; College of Engineering; N/A; N/A; 178902; 179391Chatter is a limiting factor during boring of deep holes with long slender boring bars. In this article, a new magnetorheological (MR) damper is introduced to increase the stability of the boring process. The sponge-type configuration of the damper utilizes a minimal amount of MR fluid in the annulus around the boring bar. The MR fluid layer and the electromagnetic circuit are externally applied to the boring bar, which allows easy installation and adjustability in bar length. A custom made, bidisperse MR fluid is used to eliminate particle sedimentation and enhance the lifetime of the damper. The modal analysis of the boring bar with the new MR damper shows improvements in both the damping and the dynamic stiffness of the system. This enhancement significantly increases the chatter-free depth of cut on the stability lobe diagrams. This article presents the experimental validations on the boring of AL 7075 and Inconel 718 workpieces which are materials widely used in many aerospace applications. The damper is installed on a conventional boring bar for a CNC machining center setup, and its performance is tested under various machining conditions.Publication Metadata only A new venue toward predicting the role of hydrogen embrittlement on metallic materials(Springer, 2016) N/A; N/A; Department of Chemical and Biological Engineering; Department of Mechanical Engineering; Bal, Burak; Şahin, İbrahim; Uzun, Alper; Canadinç, Demircan; PhD Student; PhD Student; Faculty Member; Faculty Member; Department of Chemical and Biological Engineering; Department of Mechanical Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; College of Engineering; College of Engineering; N/A; N/A; 59917; 23433This paper presents a new crystal plasticity formulation to predict the role of hydrogen embrittlement on the mechanical behavior of metallic materials. Specifically, a series of experiments were carried out to monitor the role of hydrogen interstitial content on the uniaxial tensile deformation response of iron alloyed with hydrogen, and the classical Voce hardening scheme was modified to account for the shear stresses imposed on arrested dislocations due to the surrounding hydrogen interstitials. The proposed set of physically grounded crystal plasticity formulations successfully predicted the deformation response of iron in the presence of different degrees of hydrogen embrittlement. Moreover, the combined experimental and modeling effort presented herein opens a new venue for predicting the alterations in the performance of metallic materials, where the hydrogen embrittlement is unavoidable.Publication Metadata only A novel approach for monitoring plastic flow localization during in-situ sem testing of small-scale samples(Springer, 2018) Niendorf, Thomas; Weidner, Anja; N/A; Department of Mechanical Engineering; Mirzajanzadeh, Morad; Canadinç, Demircan; PhD Student; Faculty Member; Department of Mechanical Engineering; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); Graduate School of Sciences and Engineering; College of Engineering; N/A; 23433A novel method is proposed for monitoring the plastic flow localization during in-situ scanning electron microscopy (SEM) testing of small-scale AISI 316 L stainless steel. Stress-strain behavior of the material was obtained using a hybrid numerical-experimental (HNE) approach. By repeatedly illustrating each pair of sequentially taken SEM surface images throughout the deformation history in alternating order in form of a video, location of the material points which are not moving during the deformation can be detected. At the initial stages of deformation these points are located on the geometrical symmetry line of the test sample, however; when uniform straining limit of the material is reached, the locations of the stationary material points reveal the plastic localization regions. The current results clearly prove the feasibility of the presented method in monitoring primary plastic localization events through in-situ SEM tensile testing.Publication Metadata only A review of active vibration and noise suppression of plate-like structures with piezoelectric transducers(Sage Publications Ltd, 2015) N/A; Department of Mechanical Engineering; Arıdoğan, Mustafa Uğur; Başdoğan, İpek; PhD Student; Faculty Member; Department of Mechanical Engineering; Graduate School of Sciences and Engineering; College of Engineering; N/A; 179940Structural vibrations are the major causes of noise problems, passenger discomforts, and mechanical failures in aerospace, Automotive, and marine systems, which are mainly composed of lightweight and flexible plate-like structures. in order to reduce structural vibrations and noise radiations of lightweight structures, passive and active treatments have been used and investigated over the last three decades. Our aim of this article is to review current state-of-the-art of active vibration and noise suppression systems for plate and plate-like structures with various kinds of boundary conditions. the reviewed articles use numerical methods and experimental tools to study different aspects of controller architectures. in particular, the focus is placed on the active vibration and noise control systems utilizing piezoelectric patches as sensors and actuators since their popularity in vibration-based applications has increased significantly during the last two decades. We first classify the controllers according to their architectures, then compare their performance in vibration and noise attenuation, and finally provide suggestions for further progress. the categorization of the information regarding the controller strategies and sensor/actuator configurations for different host structures can be used by the controller designers as a starting point for their specific configuration.