Researcher:
Avcı, Gökay

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PhD Student

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Gökay

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Avcı

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Avcı, Gökay

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2018 - 201962020 - 20213

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Researcher Of Publications: search.filters.isAuthorOfPublication.2d5a749f-e7d1-4a15-8afb-6ef8b53c9f29

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    PublicationMetadata only
    An extensive comparative analysis of two MOF databases: high-throughput screening of computation-ready MOFs for CH4 and H2 adsorption
    (Royal Soc Chemistry, 2019) Erucar, Ilknur; N/A; N/A; N/A; N/A; Department of Chemical and Biological Engineering; Department of Chemical and Biological Engineering; Altıntaş, Çiğdem; Avcı, Gökay; Harman, Hilal Dağlar; Azar, Ayda Nemati Vesali; Velioğlu, Sadiye; Keskin, Seda; Researcher; PhD Student; PhD Student; PhD Student; Researcher; Faculty Member; Department of Chemical and Biological Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; Graduate School of Sciences and Engineering; College of Engineering; College of Engineering; N/A; N/A; N/A; N/A; 200650; 40548
    Computation-ready metal-organic framework (MOF) databases (DBs) have tremendous value since they provide directly useable crystal structures for molecular simulations. The currently available two DBs, the CoRE DB (computation-ready, experimental MOF database) and CSDSS DB (Cambridge Structural Database non-disordered MOF subset) have been widely used in high-throughput molecular simulations. These DBs were constructed using different methods for collecting MOFs, removing bound and unbound solvents, treating charge balancing ions, missing hydrogens and disordered atoms of MOFs. As a result of these methodological differences, some MOFs were reported under the same name but with different structural features in the two DBs. In this work, we first identified 3490 common MOFs of CoRE and CSDSS DBs and then performed molecular simulations to compute their CH4 and H-2 uptakes. We found that 387 MOFs result in different gas uptakes depending on from which DB their structures were taken and we identified them as problematic' MOFs. CH4/H-2 mixture adsorption simulations showed that adsorbent performances of problematic MOFs, such as selectivity and regenerability, also significantly change depending on the DB used and lead to large variations in the ranking of materials and identification of the top MOFs. Possible reasons of different structure modifications made by the two DBs were investigated in detail for problematic MOFs. We described five main cases to categorize the problematic MOFs and discussed what types of different modifications were performed by the two DBs in terms of removal of unbound and bound solvents, treatment of missing hydrogen atoms, charge balancing ions etc. with several examples in each case. With this categorization, we aimed to direct researchers to computation-ready MOFs that are the most consistent with their experimentally reported structures. We also provided the new computation-ready structures for 54 MOFs for which the correct structures were missing in both DBs. This extensive comparative analysis of the two DBs will clearly show how and why the DBs differently modified the same MOFs and guide the users to choose either of the computation-ready MOFs from the two DBs depending on their purpose of molecular simulations.
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    PublicationOpen Access
    Database for CO2 separation performances of MOFs based on computational materials screening
    (American Chemical Society (ACS), 2018) Eruçar, İlknur; Department of Chemical and Biological Engineering; Altıntaş, Çiğdem; Avcı, Gökay; Harman, Hilal Dağlar; Azar, Ayda Nemati Vesali; Velioğlu, Sadiye; Keskin, Seda; Researcher; Post Doctorate Student; Department of Chemical and Biological Engineering; College of Engineering; N/A; N/A; N/A; N/A; N/A; 40548
    Metal-organic frameworks (MOFs) are potential adsorbents for CO2 capture. Because thousands of MOFs exist, computational studies become very useful in identifying the top performing materials for target applications in a time-effective manner. In this study, molecular simulations were performed to screen the MOF database to identify the best materials for CO2 separation from flue gas (CO2/N-2) and landfill gas (CO2/CH4) under realistic operating conditions. We validated the accuracy of our computational approach by comparing the simulation results for the CO2 uptakes, CO2/N-2 and CO2/CH4 selectivities of various types of MOFs with the available experimental data. Binary CO2/N-2 and CO2/CH4 mixture adsorption data were then calculated for the entire MOF database. These data were then used to predict selectivity, working capacity, regenerability, and separation potential of MOFs. The top performing MOF adsorbents that can separate CO2/N-2 and CO2/CH4 with high performance were identified. Molecular simulations for the adsorption of a ternary CO2/N-2/CH4 mixture were performed for these top materials to provide a more realistic performance assessment of MOF adsorbents. The structure-performance analysis showed that MOFs with Delta Q(st)(0) > 30 kJ/mol, 3.8 angstrom < pore-limiting diameter < 5 angstrom, 5 angstrom < largest cavity diameter < 7.5 angstrom, 0.5 < phi < 0.75, surface area < 1000 m(2)/g, and rho > 1 g/cm(3) are the best candidates for selective separation of CO2 from flue gas and landfill gas. This information will be very useful to design novel MOFs exhibiting high CO2 separation potentials. Finally, an online, freely accessible database https://cosmoserc.ku.edu.tr was established, for the first time in the literature, which reports all of the computed adsorbent metrics of 3816 MOFs for CO2/N-2, CO2/CH4, and CO2/N-2/CH4 separations in addition to various structural properties of MOFs.
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    PublicationOpen Access
    Effect of MOF database selection on the assessment of gas storage and separation potentials of MOFs
    (Wiley, 2021) Eruçar, İlknur; Department of Chemical and Biological Engineering; N/A; Harman, Hilal Dağlar; Gülbalkan, Hasan Can; Aksu, Gökhan Önder; Altundal, Ömer Faruk; Altıntaş, Çiğdem; Avcı, Gökay; Keskin, Seda; Researcher; Department of Chemical and Biological Engineering; Graduate School of Sciences and Engineering; College of Engineering; N/A; N/A; N/A; N/A; N/A; N/A; 40548
    Development of computation‐ready metal–organic framework databases (MOF DBs) has accelerated high‐throughput computational screening (HTCS) of materials to identify the best candidates for gas storage and separation. These DBs were constructed using structural curations to make MOFs directly usable for molecular simulations, which caused the same MOF to be reported with different structural features in different DBs. We examined thousands of common materials of the two recently updated, very widely used MOF DBs to reveal how structural discrepancies affect simulated CH4, H2, CO2 uptakes and CH4/H2 separation performances of MOFs. Results showed that DB selection has a significant effect on the calculated gas uptakes and ideal selectivities of materials at low pressure. A detailed analysis on the curated structures was provided to isolate the critical elements of MOFs determining the gas uptakes. Identification of the top‐performing materials for gas separation was shown to strongly depend on the DB used in simulations.
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    PublicationOpen Access
    In silico design of MOFs with enhanced CO2 separation performances: role of metal sites
    (American Chemical Society (ACS), 2019) Department of Chemical and Biological Engineering; Avcı, Gökay; Velioğlu, Sadiye; Keskin, Seda; Post Doctorate Student; Faculty Member; Department of Chemical and Biological Engineering; Graduate School of Sciences and Engineering; N/A; 200650; 40548
    In this study, grand canonical Monte Carlo simulations were performed to investigate the impact of metal centers on CO2/H-2 mixture adsorption and separation performance of two different metal organic framework (MOF) series, M-HKUST-1 and M-HATGUF, where M represents different metals: Cd, Co, Cr, Cu, Fe, Mn, Mo, Ni, Ru, and Zn. Results show that the type of metal site affects the CO2 and H-2 uptakes of MOFs, and as a result, adsorbent performance metrics of MOFs such as selectivity, working capacity, regenerability, and adsorbent performance score significantly vary depending on the metal type. Cr-HKUST-1 and Cd-HKUST-1 were identified to have 11% and 38% enhanced CO2/H-2 selectivities in addition to 27% and 60% enhanced adsorbent performance scores compared to original Cu-HKUST-1, respectively. CO2/H-2 selectivity of HATGUF was found to be almost doubled by changing the metal from Cu to Cd in addition to 142% increase in the adsorbent performance score of HATGUF. Our results revealed that changing the metal type of MOFs offers a great opportunity in the way of improving the CO2/H-2 separation performance of materials. Considering the very large number of available MOFs and metals, these results will be useful to design new MOFs by directing the selection of metals that will lead to high-performance adsorbents for CO2 capture.
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    PublicationOpen Access
    An extensive comparative analysis of two MOF databases: high-throughput screening of computation-ready MOFs for CH4 and H2 adsorption
    (Royal Society of Chemistry (RSC), 2019) Eruçar, İlknur; Department of Chemical and Biological Engineering; Keskin, Seda; Velioğlu, Sadiye; Altıntaş, Çiğdem; Avcı, Gökay; Harman, Hilal Dağlar; Azar, Ayda Nemati Vesali; Researcher; Department of Chemical and Biological Engineering; Graduate School of Sciences and Engineering; 40548; N/A; N/A; N/A; N/A; N/A
    Computation-ready metal–organic framework (MOF) databases (DBs) have tremendous value since they provide directly useable crystal structures for molecular simulations. The currently available two DBs, the CoRE DB (computation-ready, experimental MOF database) and CSDSS DB (Cambridge Structural Database non-disordered MOF subset) have been widely used in high-throughput molecular simulations. These DBs were constructed using different methods for collecting MOFs, removing bound and unbound solvents, treating charge balancing ions, missing hydrogens and disordered atoms of MOFs. As a result of these methodological differences, some MOFs were reported under the same name but with different structural features in the two DBs. In this work, we first identified 3490 common MOFs of CoRE and CSDSS DBs and then performed molecular simulations to compute their CH4 and H2 uptakes. We found that 387 MOFs result in different gas uptakes depending on from which DB their structures were taken and we identified them as ‘problematic’ MOFs. CH4/H2 mixture adsorption simulations showed that adsorbent performances of problematic MOFs, such as selectivity and regenerability, also significantly change depending on the DB used and lead to large variations in the ranking of materials and identification of the top MOFs. Possible reasons of different structure modifications made by the two DBs were investigated in detail for problematic MOFs. We described five main cases to categorize the problematic MOFs and discussed what types of different modifications were performed by the two DBs in terms of removal of unbound and bound solvents, treatment of missing hydrogen atoms, charge balancing ions etc. with several examples in each case. With this categorization, we aimed to direct researchers to computation-ready MOFs that are the most consistent with their experimentally reported structures. We also provided the new computation-ready structures for 54 MOFs for which the correct structures were missing in both DBs. This extensive comparative analysis of the two DBs will clearly show how and why the DBs differently modified the same MOFs and guide the users to choose either of the computation-ready MOFs from the two DBs depending on their purpose of molecular simulations.
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    PublicationOpen Access
    Metal exchange boosts the CO2 selectivity of metal organic frameworks having Zn-Oxide nodes
    (American Chemical Society (ACS), 2021) N/A; Department of Chemical and Biological Engineering; Keskin, Seda; Avcı, Gökay; Altıntaş, Çiğdem; Researcher; Department of Chemical and Biological Engineering; College of Engineering; Graduate School of Sciences and Engineering; 40548; N/A; N/A
    A large number of metal organic frameworks (MOFs) synthesized to date have nodes with a Zn metal, and a detailed understanding of their gas separation efficiency upon metal exchange is needed to pave the way for designing the next generation of MOFs. In this work, we implemented a protocol to identify MOFs with Zn nodes out of 10,221 MOFs and classified them into two main groups. Depending on the pore properties and adsorption selectivities, two MOFs from IRMOFs and two MOFs from ZnO-MOFs were selected. The metal atom (Zn) of the selected four MOFs was exchanged with eight different metals (Cd, Co, Cr, Cu, Mn, Ni, Ti, and V), and 32 different metal-exchanged MOFs (M-MOFs) were obtained. By performing grand canonical Monte Carlo simulations, we investigated the influence of the metal type on the CO2/H-2 and CO2/CH4 separation performances of these 32 M-MOFs. Physical properties of the MOFs such as the pore size and surface area, and chemical properties such as the partial charges of the atoms in the framework were investigated to understand the effect of metal exchange on the gas adsorption and separation performances of materials. Exchange of Zn with V and Cr led to a remarkable increase in the CO2 uptakes of selected MOFs and these increases were reflected on the adsorption selectivity, working capacity, and the adsorbent performance score of MOFs. The exchange of Zn with V increased the selectivity of one of the MOFs from 119 to 355 and the adsorbent performance score from 70 to 444 mol/kg, while for another MOF, exchange of Zn with Cr increased the selectivity from 161 to 921 and the adsorbent performance score from 162 to 1233 mol/kg under the condition of vacuum swing adsorption. The molecular level insights we provided to explain the improvement in the gas separation performances of M-MOFs will serve as a guide to design materials with exceptional CO2 separation performances.
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    PublicationOpen Access
    Computer simulations of 4240 MOF membranes for H-2/CH4 separations: insights into structure-performance relations
    (Royal Society of Chemistry (RSC), 2018) Gülçay, Ezgi; Eruçar, İlknur; Department of Chemical and Biological Engineering; Keskin, Seda; Altıntaş, Çiğdem; Avcı, Gökay; Harman, Hilal Dağlar; Researcher; Department of Chemical and Biological Engineering; Graduate School of Sciences and Engineering; 40548; N/A; N/A; N/A
    Design of new membranes having high H-2/CH4 selectivity and high H-2 permeability is strongly desired to reduce the energy demand for H-2 production. Metal organic frameworks (MOFs) offer a great promise for membrane-based gas separations due to their tunable physical and chemical properties. We performed a high-throughput computational screening study to examine membrane-based H-2/CH4 separation potentials of 4240 MOFs. Grand canonical Monte Carlo (GCMC) and molecular dynamics (MD) simulations were used to compute adsorption and diffusion of H-2 and CH4 in MOFs. Simulation results were then used to predict adsorption selectivity, diffusion selectivity, gas permeability and membrane selectivity of MOFs. A large number of MOF membranes was found to outperform traditional polymer and zeolite membranes by exceeding the Robeson's upper bound for selective separation of H-2 from CH4. Structure-performance analysis was carried out to understand the relations between MOF membranes' selectivities and their pore sizes, surface areas, porosities, densities, lattice systems, and metal types. Results showed that MOFs with pore limiting diameters between 3.8 and 6 angstrom, the largest cavity diameters between 6 and 12 angstrom, surface areas less than 1000 m(2) g(-1), porosities between 0.5 and 0.75, and densities between 1 and 1.5 g cm(-3) are the most promising membranes leading to H-2 selectivities > 10 and H-2 permeabilities > 10(4) Barrer. Our results suggest that monoclinic MOFs having copper metals are the best membrane candidates for H-2/CH4 separations. This study represents the first high-throughput computational screening of the most recent MOF database for membrane-based H-2/CH4 separation and microscopic insight provided from molecular simulations will be highly useful for the future design of new MOFs having extraordinarily high H-2 selectivities.
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    PublicationOpen Access
    Do new MOFs perform better for CO2 capture and H2 purification? computational screening of the updated MOF database
    (American Chemical Society (ACS), 2020) Eruçar, İlknur; Department of Chemical and Biological Engineering; N/A; Keskin, Seda; Avcı, Gökay; Faculty Member; Department of Chemical and Biological Engineering; College of Engineering; Graduate School of Sciences and Engineering; 40548; N/A
    High-throughput computational screening of metal organic frameworks (MOFs) enables the discovery of new promising materials for CO2 capture and H2 purification. The number of synthesized MOFs is increasing very rapidly, and computation-ready, experimental MOF databases are being updated. Screening the most recent MOF database is essential to identify the best performing materials among several thousands. In this work, we performed molecular simulations of the most recent MOF database and described both the adsorbent and membrane-based separation performances of 10 221 MOFs for CO2 capture and H2 purification. The best materials identified for pressure swing adsorption, vacuum swing adsorption, and temperature swing adsorption processes outperformed commercial zeolites and previously studied MOFs in terms of CO2 selectivity and adsorbent performance score. We then discussed the applicability of Ideal Adsorbed Solution Theory (IAST), effects of inaccessible local pores and catenation in the frameworks and the presence of impurities in CO2/H2 mixture on the adsorbent performance metrics of MOFs. Very large numbers of MOF membranes were found to outperform traditional polymer and porous membranes in terms of H2 permeability. Our results show that MOFs that are recently added into the updated MOF database have higher CO2/H2 separation potentials than the previously reported MOFs. MOFs with small pores were identified as potential adsorbents for selective capture of CO2 from H2, whereas MOFs with high porosities were the promising membranes for selective separation of H2 from CO2. This study reveals the importance of enriching the number of MOFs in high-throughput computational screening studies for the discovery of new promising materials for CO2/H2 separation.
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    PublicationOpen Access
    High-throughput screening of MOF adsorbents and membranes for H-2 purification and CO2 capture
    (American Chemical Society (ACS), 2018) Department of Chemical and Biological Engineering; Keskin, Seda; Avcı, Gökay; Velioğlu, Sadiye; Faculty Member; Post Doctorate Student; Department of Chemical and Biological Engineering; Graduate School of Sciences and Engineering; 40548; N/A; N/A
    Metal organic frameworks (MOFs) have emerged as great adsorbent and membrane candidates for separation of CO2/H-2 mixtures. The main challenge is the existence of thousands of MOFs, which requires computational screening methods to identify the best materials prior to experimental efforts. In this study, we performed high-throughput computational screening of MOFs to examine their adsorbent and membrane performances for CO2/H-2 separation. Grand canonical Monte Carlo (GCMC) and molecular dynamics (MD) simulations were used to compute various adsorbent and membrane performance metrics of 3857 MOFs. CO2/H-2 adsorption selectivities of MOFs at pressure swing adsorption (PSA) and vacuum swing adsorption (VSA) conditions were calculated to be in the range of 2.5-25 000 and 2.5-85 000, respectively, outperforming many zeolite adsorbents. Correlations between the ranking of MOF adsorbents at the PSA and VSA conditions were examined. H-2/CO2 selectivities and H-2 permeabilities of MOF membranes were computed as 2.1 X 10(-5)-6.3 and 230-1.7 X 10(6) Barrer, respectively. A high number of MOF membranes was identified to surpass the upper bound defined for gas permeabilities of MOFs. Structure performance relations revealed that MOFs with narrow pore sizes the best adsorbent materials for separation of CO2 from H-2, whereas MOFs with large pore sizes and high polymers due to high and low porosities are porosities are the best membrane materials for selective separation of H-2. Our results will guide the selection of MOF adsorbents and membranes for efficient H-2 purification and CO2 capture processes.