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Conformational transitions in the ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model

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dc.contributor.departmentGraduate School of Sciences and Engineering
dc.contributor.facultymemberYes
dc.contributor.kuauthorBayrak, Çiğdem Sevim
dc.contributor.kuauthorErman, Burak
dc.contributor.schoolcollegeinstituteGRADUATE SCHOOL OF SCIENCES AND ENGINEERING
dc.date.accessioned2024-11-09T23:02:27Z
dc.date.issued2014
dc.description.abstractThe dynamic rotational isomeric state model is applied to predict the internal dynamics of the 20 amino acids. Transition rates between rotational isomeric states are calculated from molecular dynamics simulations of Gly-Gly-X-Gly-Gly peptides where X represents one of the 20 amino acids. Predicted relaxation times are in good agreement with fluorescence quenching rate measurements.
dc.description.fulltextNo
dc.description.harvestedfromManual
dc.description.indexedbyWOS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.openaccessNO
dc.description.peerreviewstatusN/A
dc.description.publisherscopeInternational
dc.description.readpublishN/A
dc.description.sponsoredbyTubitakEuN/A
dc.description.studentonlypublicationNo
dc.description.studentpublicationYes
dc.description.versionN/A
dc.identifier.WoSQuartileQ2
dc.identifier.doi10.1039/c3mb70433e
dc.identifier.eissn1742-2051
dc.identifier.embargoN/A
dc.identifier.endpage671
dc.identifier.issn1742-206X
dc.identifier.issue3
dc.identifier.pubmed24442235
dc.identifier.scopus2-s2.0-84893498393
dc.identifier.startpage663
dc.identifier.urihttps://doi.org/10.1039/c3mb70433e
dc.identifier.urihttps://hdl.handle.net/20.500.14288/8285
dc.identifier.volume10
dc.identifier.wos000330798200030
dc.keywordsRotational isomeric state model
dc.keywordsAmino acid dynamics
dc.keywordsMolecular dynamics simulation
dc.keywordsFluorescence quenching
dc.language.isoeng
dc.publisherRoyal Society of Chemistry
dc.relation.affiliationKoç University
dc.relation.collectionKoç University Institutional Repository
dc.relation.ispartofMolecular Biosystems
dc.relation.openaccessN/A
dc.rightsN/A
dc.subjectBiochemistry
dc.subjectMolecular biology
dc.titleConformational transitions in the ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.kuauthorBayrak, Çiğdem Sevim
local.contributor.kuauthorErman, Burak
relation.isOrgUnitOfPublication3fc31c89-e803-4eb1-af6b-6258bc42c3d8
relation.isOrgUnitOfPublication.latestForDiscovery3fc31c89-e803-4eb1-af6b-6258bc42c3d8
relation.isParentOrgUnitOfPublication434c9663-2b11-4e66-9399-c863e2ebae43
relation.isParentOrgUnitOfPublication.latestForDiscovery434c9663-2b11-4e66-9399-c863e2ebae43

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