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Conformational transitions in the ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model

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dc.contributor.departmentN/A
dc.contributor.departmentDepartment of Chemical and Biological Engineering
dc.contributor.kuauthorBayrak, Çiğdem Sevim
dc.contributor.kuauthorErman, Burak
dc.contributor.kuprofilePhD Student
dc.contributor.kuprofileFaculty Member
dc.contributor.otherDepartment of Chemical and Biological Engineering
dc.contributor.schoolcollegeinstituteGraduate School of Sciences and Engineering
dc.contributor.schoolcollegeinstituteCollege of Engineering
dc.contributor.yokidN/A
dc.contributor.yokid179997
dc.date.accessioned2024-11-09T23:02:27Z
dc.date.issued2014
dc.description.abstractThe dynamic rotational isomeric state model is applied to predict the internal dynamics of the 20 amino acids. Transition rates between rotational isomeric states are calculated from molecular dynamics simulations of Gly-Gly-X-Gly-Gly peptides where X represents one of the 20 amino acids. Predicted relaxation times are in good agreement with fluorescence quenching rate measurements.
dc.description.indexedbyWoS
dc.description.indexedbyScopus
dc.description.indexedbyPubMed
dc.description.issue3
dc.description.openaccessNO
dc.description.publisherscopeInternational
dc.description.volume10
dc.identifier.doi10.1039/c3mb70433e
dc.identifier.eissn1742-2051
dc.identifier.issn1742-206X
dc.identifier.quartileQ2
dc.identifier.scopus2-s2.0-84893498393
dc.identifier.urihttp://dx.doi.org/10.1039/c3mb70433e
dc.identifier.urihttps://hdl.handle.net/20.500.14288/8285
dc.identifier.wos330798200030
dc.keywordsMolecular-dynamics
dc.keywordsMacrocyclization equilibria
dc.keywordsChemical-shifts
dc.keywordsSimulations
dc.keywordsMotions
dc.keywordsscale
dc.languageEnglish
dc.publisherRoyal Soc Chemistry
dc.sourceMolecular Biosystems
dc.subjectBiochemistry
dc.subjectMolecular biology
dc.titleConformational transitions in the ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model
dc.typeJournal Article
dspace.entity.typePublication
local.contributor.authorid0000-0002-3883-5535
local.contributor.authorid0000-0002-2496-6059
local.contributor.kuauthorBayrak, Çiğdem Sevim
local.contributor.kuauthorErman, Burak
relation.isOrgUnitOfPublicationc747a256-6e0c-4969-b1bf-3b9f2f674289
relation.isOrgUnitOfPublication.latestForDiscoveryc747a256-6e0c-4969-b1bf-3b9f2f674289

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