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Publication Metadata only ‘Anti-commutable’ local pre-Leibniz algebroids and admissible connections(Elsevier, 2023) Department of Physics; N/A; Dereli, Tekin; Doğan, Keremcan; Faculty Member; PhD Student; Department of Physics; College of Sciences; Graduate School of Sciences and Engineering; 201358; N/AThe concept of algebroid is convenient as a basis for constructions of geometrical frameworks. For example, metric-affine and generalized geometries can be written on Lie and Courant algebroids, respectively. Furthermore, string theories might make use of many other algebroids such as metric algebroids, higher Courant algebroids, or conformal Courant algebroids. Working on the possibly most general algebroid structure, which generalizes many of the algebroids used in the literature, is fruitful as it creates a chance to study all of them at once. Local pre-Leibniz algebroids are such general ones in which metric-connection geometries are possible to construct. On the other hand, the existence of the 'locality operator', which is present for the left-Leibniz rule for the bracket, necessitates the modification of torsion and curvature operators in order to achieve tensorial quantities. In this paper, this modification of torsion and curvature is explained from the point of view that the modification is applied to the bracket instead. This leads one to consider 'anti-commutable' local pre-Leibniz algebroids which satisfy an anti-commutativity-like property defined with respect to a choice of an equivalence class of connections. These 'admissible' connections are claimed to be the necessary ones while working on a geometry of algebroids. This claim is due to the fact that one can prove many desirable properties and relations if one uses only admissible connections. For instance, for admissible connections, we prove the first and second Bianchi identities, Cartan structure equations, Cartan magic formula, the construction of Levi-Civita connections, the decomposition of connection in terms of torsion and non-metricity. These all are possible because the modified bracket becomes anti-symmetric for an admissible connection so that one can apply the machinery of almost-or pre-Lie algebroids. We investigate various algebroid structures from the literature and show that they admit admissible connections which are metric-compatible in some generalized sense. Moreover, we prove that local pre-Leibniz algebroids that are not anti-commutable cannot be equipped with a torsion-free, and in particular Levi-Civita, connection.Publication Metadata only (Im)moral borders in practice(Taylor & Francis, 2021) El Qadim, Nora; Isleyen, Beste; de Vries, Leonie Ansems; Hansen, Signe Sofie; Lisle, Debbie; Simonneau, Damien; N/A; Karadağ, Sibel; Researcher; Migration Research Program at Koç University (MIReKoç) / Göç Araştırmaları Uygulama ve Araştırma Merkezi (MIReKoç); N/A; N/AThis Forum aims to push existing debates in critical border and migration studies over the featuring of morals, ethics and rights in everyday practices relating to the governance of the mobility of non-citizen populations. Its contributors steer away from the actual evaluation or advocacy of the good/just/ethical, focusing instead on the sociological examination of morals and ethics in practice, i.e. how actors understand morally and ethically the border and migration policies they implement or resist. A proliferating interest in the discursive and non-discursive materialisation of moral and ethical elements in asylum and migration policies has examined the intertwinement of care and control logics underlying the management of refugee camps, borders and borderzones, and hotspots alongside the deployment of search-and-rescue operations. Nevertheless, recent research has shown the need to unpack narratives and actions displaying values and symbols that are not necessarily encompassed within this intertwinement of compassion and repression. We argue that there is a need to pay more attention to the diversity, plurality and the operation of morality, ethics and rights in settings and geographies, and of including a diversity of actors both across and beyond EUrope.Publication Metadata only 3D shape recovery and tracking from multi-camera video sequences via surface deformation(Institute of Electrical and Electronics Engineers (IEEE), 2006) Skala, V.; N/A; Department of Computer Engineering; Sahillioğlu, Yusuf; Yemez, Yücel; PhD Student; Faculty Member; Department of Computer Engineering; Graduate School of Sciences and Engineering; College of Engineering; 215195; 107907This paper addresses 3D reconstruction and modeling of time-varying real objects using multicamera video. The work consists of two phases. In the first phase, the initial shape of the object is recovered from its silhouettes using a surface deformation model. The same deformation model is also employed in the second phase to track the recovered initial shape through the time-varying silhouette information by surface evolution. The surface deformation/evolution model allows us to construct a spatially and temporally smooth surface mesh representation having fixed connectivity. This eventually leads to an overall space-time representation that preserves the semantics of the underlying motion and that is much more efficient to process, to visualize, to store and to transmit. / Bu makale, çok kameralı video kullanarak zamanla değişen gerçek nesnelerin 3B yeniden yapılandırılmasını ve modellenmesini ele almaktadır. Çalışma iki aşamadan oluşmaktadır. İlk aşamada, nesnenin ilk şekli, bir yüzey deformasyon modeli kullanılarak silüetlerinden kurtarılır. Aynı deformasyon modeli, ikinci aşamada, yüzey evrimi yoluyla zamanla değişen siluet bilgisi yoluyla geri kazanılan ilk şekli izlemek için de kullanılır. Yüzey deformasyonu/evrimi modeli, sabit bağlantıya sahip uzamsal ve zamansal olarak pürüzsüz bir yüzey ağ temsili oluşturmamıza izin verir. Bu, sonunda, altta yatan hareketin anlamını koruyan ve işlemesi, görselleştirmesi, depolaması ve iletmesi çok daha verimli olan genel bir uzay-zaman temsiline yol açar.Publication Metadata only 3D surface topography analysis in 5-axis ball-end milling(Elsevier, 2017) N/A; Department of Mechanical Engineering; Khavidaki, Sayed Ehsan Layegh; Lazoğlu, İsmail; PHD Student; Faculty Member; Department of Mechanical Engineering; Graduate School of Sciences and Engineering; College of Engineering; N/A; 179391This article presents a new analytical model to predict the topography and roughness of the machined surface in 5-axis ball-end milling operation for the first time. The model is able to predict the surface topography and profile roughness parameters such as 3D average roughness (Sa) and 3D root mean square roughness (Sq) by considering the process parameters such as the feedrate, number of flutes, step over and depth of cut as well as the effects of eccentricity and tool runout in 5-axis ball-end milling. This model allows to simulate the effects of the lead and tilt angles on the machined surface quality in the virtual environment prior to the costly 5-axis machining operations. The effectiveness of the introduced surface topography prediction model is validated experimentally by conducting 5-axis ball-end milling tests in various cutting conditions. (C) 2017 Published by Elsevier Ltd on behalf of CIRP.Publication Metadata only [Ga-68]Ga-PSMA-11 and [F-18]FDG uptake of venous tumor thrombus in inferior vena cava and left common iliac vein from prostate cancer on positron emission tomography(Springer, 2023) Kabaoğlu, Zeynep Ünal; N/A; Seymen, Hülya; Esen, Barış; Kulaç, İbrahim; Aksoy, Murat; Demirkol, Mehmet Onur; Kordan, Yakup; Teaching Faculty; Teaching Faculty; Faculty Member; Other; Faculty Member; Faculty Member; School of Medicine; School of Medicine; School of Medicine; School of Medicine; School of Medicine; School of Medicine; 350778; 199167; 170305; N/A; 196946; 157552N/APublication Metadata only A 3-year-old child with multi-drug resistant epilepsy responding to pharmacological and nonpharmacological treatments(Taylor & Francis, 2022) Yıldırım, Canan; N/A; Coşkun, Yeşim; Doctor; N/A; Koç University Hospital; N/AIntroduction: Despite the development of new antiseizure drugs (ASDs), around one third of epilepsy patients become refractory to treatment or experience adverse events due to ASDs. Therefore, discovery of new ASDs and new therapy options are crucial to improve the quality of life. Herein, we report a 3-year-old child with multi-drug resistant epilepsy caused by perinatal asphyxia whose seizures were reduced by 90% after the introduction of ketogenic diet, vagal nerve stimulation (VNS) AspireSR (SR-seizure response) and oral cannabidiol.Case presentation: A 9-month-old female infant had a history of multidrug resistant epilepsy due to perinatal asphyxia. At admission, she was experiencing up to 20-25 seizures per day lasting for 2-3 minutes. In addition to antiseizure drugs (ASDs), she was put on ketogenic diet (KD), vagal nerve stimulation (VNS) aspire seizure response (AspireSR) was inserted and oral cannabidiol (CBD) was started sequentially. Using pharmacological and nonph armacological therapies, her seizures have been reduced by 90%.Conclusion: The concurrent use of pharmacological and nonpharmacological therapies may be beneficial to improve seizures in infants with multi- Furthermore, our patient is the youngest child inserted VNS AspireSR in Turkey.Publication Metadata only A 35--μm pitch IR thermo-mechanical MEMS sensor with AC-coupled optical readout(IEEE-Inst Electrical Electronics Engineers Inc, 2015) Ferhanoğlu, Onur; Torun, Hamdi; N/A; Department of Electrical and Electronics Engineering; Department of Electrical and Electronics Engineering; Adiyan, Ulaş; Çivitçi, Fehmi; Ürey, Hakan; PhD Student; Researcher; Faculty Member; Department of Electrical and Electronics Engineering; Graduate School of Sciences and Engineering; College of Sciences; College of Engineering; N/A; 194282; 8579A thermo-mechanical MEMS detector with 35-mu m pixel pitch is designed, fabricated, and characterized. This fabricated design has one of the smallest pixel sizes among the IR thermo-mechanical MEMS sensors in the literature. The working principle of the MEMS detector is based on the bimaterial effect that creates a deflection when exposed to IR radiation in the 812-mu m waveband. The nanometer level out of plane mechanical motion is observed in response to IR heating of the pixel, which is detected by a diffraction grating-based optical readout. Performance of MEMS sensor arrays with optical readout have been limited by a large DC bias that accompanies a small AC signal. We developed a novel optical setup to reduce the DC term and the related noise using an AC-coupled detection scheme. Detailed noise characterization of the pixel and the readout system is reported in this paper. The noise equivalent temperature difference of our detector is measured as 216 mK using f/0.86 lens with the AC-coupled optical readout. Finally, we obtained a thermal image using a single MEMS pixel combined with a scanning configuration. Despite the reduced pixel size, the measured noise levels are comparable to the state-of-the-art thermo-mechanical IR sensors.Publication Metadata only A brief atlas of insulin(Bentham Science, 2022) N/A; Department of Molecular Biology and Genetics; Ayan, Esra; Demirci, Hasan; PhD Student; Faculty Member; Department of Molecular Biology and Genetics; Koç Üniversitesi İş Bankası Yapay Zeka Uygulama ve Araştırma Merkezi (KUIS AI)/ Koç University İş Bank Artificial Intelligence Center (KUIS AI); Graduate School of Sciences and Engineering; College of Sciences; N/A; 307350Insulin is an essential factor for mammalian organisms: a regulator of glucose metabolism and other key signaling pathways. Insulin is also a multifunctional hormone whose absence can cause many diseases. Recombinant insulin is widely used in the treatment of diabetes. Understanding insulin, biosimilars, and biobetters from a holistic perspective will help pharmacologically user-friendly molecules design and develop personalized medicine-oriented therapeutic strategies for diabetes. Additionally, it helps to understand the underlying mechanism of other insulin-dependent metabolic disorders. The purpose of this atlas is to review insulin from a biotechnologi-cal, basic science, and clinical perspective, explain nearly all insulin-related disorders and their underlying molecular mechanisms, explore exogenous/recombinant production strategies of patented and research-level insulin/analogs, and highlight their mechanism of action from a structural per-spective. Combined with computational analysis, comparisons of insulin and analogs also provide novel information about the structural dynamics of insulin.Publication Metadata only A built-in vibration sensor using ARC-discharged reactive ion plated PZT(The Institute of Electrical Engineers of Japan, 2011) Tani, Masanao; Akamatsu, Masahiro; Yasuda, Yoshiaki; Fujita, Hiroyuk; Toshiyoshi, Hiroshi; N/A; Baran, Utku; Master Student; Graduate School of Sciences and Engineering; N/AA piezoelectrically excited micro cantilever with multiple electrode ports has been developed as a standard test device to investigate the piezoelectric oscillation sensing capability. A 5 μm thick PZT was deposited by the arc-discharge reactive ion plating on a 20-μm-thick and 2700-μm-long SOI cantilever, and its piezoelectrically measured vibration signal was correlated with the reference oscillation signal from the laser Doppler vibrometer to prove the feasibility as oscillation detector. An equivalent circuit expression for the sensing electrode has been found.Publication Metadata only A case with acute baked milk protein-induced enterocolitis syndrome(Wiley, 2019) N/A; N/A; N/A; Saçkesen, Cansın; Yılmaz, Özlem; Demirkol, Demet; Faculty Member; Doctor; Faculty Member; School of Medicine; School of Medicine; School of Medicine; 182537; 140706; 108964N/A