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Permanent URI for this collectionhttps://hdl.handle.net/20.500.14288/6
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Publication Open Access Hydrothermal-electrochemical growth of heterogeneous zno: co films(SpringerOpen, 2017) Department of Chemistry; Akkaya, Ceren Yılmaz; Ünal, Uğur; PhD Student; Faculty Member; Department of Chemistry; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); College of Sciences; Graduate School of Sciences and EngineeringBACKGROUND: Central venous cannulation is a necessary invasive procedure for fluid management, haemodynamic monitoring and vasoactive drug therapy. The right internal jugular vein (RIJV) is the preferred site. Enlargement of the jugular vein area facilitates catheterization and reduces complication rates. Common methods to enlarge the RIJV cross-sectional area are the Trendelenburg position and the Valsalva maneuver. OBJECTIVE: Compare the Trendelenburg position with upper-extremity venous return blockage using the tourniquet technique. DESIGN: Prospective clinical study. SETTING: University hospital. SUBJECTS AND METHODS: Healthy adult volunteers (American Society of Anesthesiologists class I) aged 18-45 years were included in the study. The first measurement was made when the volunteers were in the supine position. The RIJV diameter and cross-sectional area were measured from the apex of the triangle formed by the clavicle and the two ends of the sternocleidomastoid muscle, which is used for the conventional approach. The second measurement was performed in a 20 degrees Trendelenburg position. After the drainage of the veins using an Esbach bandage both arms were cuffed. The third measurement was made when tourniquets were inflated. MAIN OUTCOME MEASURE(S): Hemodynamic measurements and RIJV dimensions. RESULTS: In 65 volunteers the diameter and cross-sectional area of the RIJV were significantly widened in both Trendelenburg and tourniquet measurements compared with the supine position (P<.001 for both measures). Measurements using the upper extremity tourniquet were significantly larger than Trendelenburg measurements (P=.002 and <.001 for cross-sectional area and diameter, respectively). CONCLUSION: Channelling of the upper-extremity venous return to the jugular vein was significantly superior when compared with the Trendelenburg position and the supine position. LIMITATIONS: No catheterization and study limited to healthy volunteers.Publication Open Access Effects of Bloch's hydrodynamic model on surface plasmon polariton dispersion curve and enhanced transmission of light through single nano-apertures(Society of Photo-optical Instrumentation Engineers (SPIE), 2009) Department of Physics; Çetin, Arif Engin; Müstecaplıoğlu, Özgür Esat; Faculty Member; Department of Physics; College of Sciences; N/A; 1674We have studied the surface plasmon theory with Bloch's hydrodynamic model. The results of the analysis done by Bloch model have been compared with the ones done with Drude model and the dominant differences between two models in valid frequency range have been shown. The transmittance of the slit embedded in a metal layer has been investigated by these models and the differences have been emphasized. An electron density dependent parameter defined by Bloch model has been used to control the transmission behavior of the light through nano-apertures. A system consisting of a nano-slit formed in a metal layer with a periodically textured surface used for beam focusing has been introduced and how the focusing capacity of the system is controlled by the parameter defined by Bloch model has been shown.Publication Open Access High-performance magnetic FePt (L1(0)) surface microrollers towards medical imaging-guided endovascular delivery applications(Wiley, 2021) Bozüyük, U.; Suadiye, E.; Aghakhani, A.; Doğan, N.O.; Lazovic, J.; Tiryaki, M.E.; Schneider, M.; Karacakol, A.C.; Demir, S.O., Richter, G.; Department of Mechanical Engineering; Sitti, Metin; Faculty Member; Department of Mechanical Engineering; College of Engineering; School of Medicine; 297104Controlled microrobotic navigation in the vascular system can revolutionize minimally invasive medical applications, such as targeted drug and gene delivery. Magnetically controlled surface microrollers have emerged as a promising microrobotic platform for controlled navigation in the circulatory system. Locomotion of micrororollers in strong flow velocities is a highly challenging task, which requires magnetic materials having strong magnetic actuation properties while being biocompatible. The L10-FePt magnetic coating can achieve such requirements. Therefore, such coating has been integrated into 8 µm-diameter surface microrollers and investigated the medical potential of the system from magnetic locomotion performance, biocompatibility, and medical imaging perspectives. The FePt coating significantly advanced the magnetic performance and biocompatibility of the microrollers compared to a previously used magnetic material, nickel. The FePt coating also allowed multimodal imaging of microrollers in magnetic resonance and photoacoustic imaging in ex vivo settings without additional contrast agents. Finally, FePt-coated microrollers showed upstream locomotion ability against 4.5 cm s?1 average flow velocity with real-time photoacoustic imaging, demonstrating the navigation control potential of microrollers in the circulatory system for future in vivo applications. Overall, L10-FePt is conceived as the key material for image-guided propulsion in the vascular system to perform future targeted medical interventions.Publication Open Access Characterizing the cellular response to nitrogen-doped carbon nanocups(Multidisciplinary Digital Publishing Institute (MDPI), 2019) Griffith, Amber S.; Zhang, Thomas D.; Burkert, Seth C.; Adıgüzel, Zelal; Star, Alexander; Saunders, William S.; Department of Molecular Biology and Genetics; Ayhan, Ceyda Açılan; Faculty Member; Department of Molecular Biology and Genetics; School of MedicineCarbon nanomaterials, specifically, carbon nanotubes (CNTs) have many potential applications in biology and medicine. Currently, this material has not reached its full potential for application due to the potential toxicity to mammalian cells, and the incomplete understanding of how CNTs interface with cells. The chemical composition and structural features of CNTs have been shown to directly affect their biological compatibility. The incorporation of nitrogen dopants to the graphitic lattice of CNTs results in a unique cup shaped morphology and minimal cytotoxicity in comparison to its undoped counterpart. In this study, we investigate how uniquely shaped nitrogen-doped carbon nanocups (NCNCs) interface with HeLa cells, a cervical cancer epithelial cultured cell line, and RPE-1 cells, an immortalized cultured epithelial cell line. We determined that NCNCs do not elicit a cytotoxic response in cells, and that they are uptaken via endocytosis. We have conjugated fluorescently tagged antibodies to NCNCs and shown that the protein-conjugated material is also capable of entering cells. This primes NCNCs to be a good candidate for subsequent protein modifications and applications in biological systems.Publication Open Access Luminescent PbS and PbS/CdS quantum dots with hybrid coatings as nanotags for authentication of petroleum products(American Chemical Society (ACS), 2019) Durmuşoğlu, Emek Göksu; Türker, Yurdanur; Acar, Havva Funda Yağcı; Faculty Member; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); N/A; N/A; 178902There is an urgent need to tag some valuable liquid products, such as petroleum products, for authentication. However, it is a challenging task because of the strong autofluorescence of liquid petroleum products in the visible range and the chemically active and harsh medium. Therefore, strongly luminescent, near-infrared (NIR) fluorophores with long-term stability are needed. The use of NIR quantum dots (QDs), such as lead chalcogenides, seems to be the best approach; however, most widely used coatings do not provide enough stability, and QDs are quenched in a short time in liquid petroleum products. Here, we report for the first time the synthesis of highly luminescent, ultrasmall, NIR-emitting PbS and PbS/CdS QDs with a hybrid coating consisting of oleylamine (OLA), 1-dodecanethiol (DT), and poly(methacrylic acid) (PMAA), adopting a simple, greener synthetic method. The photoluminescence (PL) emission wavelengths of these QDs were tuned between 700 and 1100 nm for detection with low-cost, widely used silicon detectors, which allows easy translation of such QDs as luminescent nanotags to serve as a means for the authentication of goods, such as petroleum. In the nanoparticle design, a thin layer of a CdS shell deposited by a cation-exchange process was adopted to enhance the emission intensity and stability of PbS QDs. The influence of postsynthetic ligand exchange of OLA with DT on the stability is also shown. PMAA in the coating provided a significant blue shift in the peak maxima, enhanced the luminescence intensity, and, most importantly, improved the long-term stability of QDs, especially in liquid petroleum products (oil, gasoline, and diesel). Such stability and size tunability was utilized to create binary barcodes. Hence, these QDs are shown as promising luminescent nanotags for liquid petroleum products. The development of such stable QD-based nanotags offers an invaluable use of nanotechnology for optical barcode generation.Publication Open Access Combining a nanoparticle-mediated immunoradiotherapy with dual blockade of LAG3 and TIGIT improves the treatment efficacy in anti-PD1 resistant lung cancer(BioMed Central, 2022) Hu, Yun; Paris, Sebastien; Bertolet, Genevieve; Barsoumian, Hampartsoum B.; He, Kewen; Chen, Dawei; Wasley, Mark; Da Silva, Jordan; Mitchell, Joylise A.; Voss, Tiffany A.; Masrorpour, Fatemeh; Leyton, Claudia Kettlun; Yang, Liangpeng; Leuschner, Carola; Puebla-Osorio, Nahum; Gandhi, Saumil; Quynh-Nhu Nguyen; Cortez, Maria Angelica; Welsh, James W.; Sezen, Duygu; Faculty Member; School of Medicine; 170535Background: while improvements in immunoradiotherapy have significantly improved outcomes for cancer patients, this treatment approach has nevertheless proven ineffective at controlling the majority of malignancies. One of the mechanisms of resistance to immunoradiotherapy is that immune cells may be suppressed via the myriad of different immune checkpoint receptors. Therefore, simultaneous blockade of multiple immune checkpoint receptors may enhance the treatment efficacy of immunoradiotherapy. Methods: we combined NBTXR3-enhanced localized radiation with the simultaneous blockade of three different checkpoint receptors: PD1, LAG3, and TIGIT, and tested the treatment efficacy in an anti-PD1-resistant lung cancer model in mice. 129 Sv/Ev mice were inoculated with fifty thousand alpha PD1-resistant 344SQR cells in the right leg on day 0 to establish primary tumors and with the same number of cells in the left leg on day 4 to establish the secondary tumors. NBTXR3 was intratumorally injected into the primary tumors on day 7, which were irradiated with 12 Gy on days 8, 9, and 10. Anti-PD1 (200 mu g), alpha LAG3 (200 mu g), and alpha TIGIT (200 mu g) were given to mice by intraperitoneal injections on days 5, 8, 11, 14, 21, 28, 35, and 42. Results: this nanoparticle-mediated combination therapy is effective at controlling the growth of irradiated and distant unirradiated tumors, enhancing animal survival, and is the only one that led to the destruction of both tumors in approximately 30% of the treated mice. Corresponding with this improved response is robust activation of the immune response, as manifested by increased numbers of immune cells along with a transcriptional signature of both innate and adaptive immunity within the tumor. Furthermore, mice treated with this combinatorial therapy display immunological memory response when rechallenged by the same cancer cells, preventing tumor engraftment. Conclusion: our results strongly attest to the efficacy and validity of combining nanoparticle-enhanced radio-therapy and simultaneous blockade of multiple immune checkpoint receptors and provide a pre-clinical rationale for investigating its translation into human patients.Publication Open Access High-yield production of biohybrid microalgae for on-demand cargo delivery(Wiley, 2020) Akolpoğlu, Mukrime Birgul; Bozüyük, Uğur; Ceylan, Hakan; Department of Chemical and Biological Engineering; Department of Mechanical Engineering; Kızılel, Seda; Doğan, Nihal Olcay; Sitti, Metin; Faculty Member; Faculty Member; Department of Chemical and Biological Engineering; Department of Mechanical Engineering; College of Engineering; Graduate School of Sciences and Engineering; School of Medicine; 28376; N/A; 297104Biohybrid microswimmers exploit the swimming and navigation of a motile microorganism to target and deliver cargo molecules in a wide range of biomedical applications. Medical biohybrid microswimmers suffer from low manufacturing yields, which would significantly limit their potential applications. In the present study, a biohybrid design strategy is reported, where a thin and soft uniform coating layer is noncovalently assembled around a motile microorganism.Chlamydomonas reinhardtii(a single-cell green alga) is used in the design as a biological model microorganism along with polymer-nanoparticle matrix as the synthetic component, reaching a manufacturing efficiency of approximate to 90%. Natural biopolymer chitosan is used as a binder to efficiently coat the cell wall of the microalgae with nanoparticles. The soft surface coating does not impair the viability and phototactic ability of the microalgae, and allows further engineering to accommodate biomedical cargo molecules. Furthermore, by conjugating the nanoparticles embedded in the thin coating with chemotherapeutic doxorubicin by a photocleavable linker, on-demand delivery of drugs to tumor cells is reported as a proof-of-concept biomedical demonstration. The high-throughput strategy can pave the way for the next-generation generation microrobotic swarms for future medical active cargo delivery tasks.Publication Open Access FR4-based electromagnetic energy harvester for wireless tyre sensor nodes(Elsevier, 2009) Department of Electrical and Electronics Engineering; Hatipoğlu, Gökhan; Ürey, Hakan; Faculty Member; Department of Electrical and Electronics Engineering; College of Engineering; N/A; 8579An electromagnetic (EM) power generator having 46 Hz resonance frequency is designed to scavenge mechanical vibrations occurring in tyres due to lyre-road contact. The major innovation is the use of FR4 as a structural spring material as well as utilizing a spacer and stopper mechanism increasing the shock resistance by limiting the maximum deflection. The novel magnet assembly and spacer design provide high power density. The tangential acceleration waveforms of typical tyre rotation is used as an input in the experiments and 0.4 mW power is obtained over a 100 Omega load resistance for 15g peak-to-peak amplitude at 22,83 Hz, corresponding to about 150 kph vehicle speed. Maximum acceleration is limited with the shaker, larger power values are expected in actual operation. The performance is obtained off-resonance and superior to resonant Silicon MEMS based scavengers.Publication Open Access Hexagonal boron nitride incorporation to achieve high performance Li4Ti5O12 electrodes(American Institute of Physics (AIP) Publishing, 2020) Department of Electrical and Electronics Engineering; Ergen, Onur; Department of Electrical and Electronics Engineering; Koç University Surface Science and Technology Center (KUYTAM) / Koç Üniversitesi Yüzey Teknolojileri Araştırmaları Merkezi (KUYTAM); College of Engineering; Graduate School of Sciences and Engineering; 272106There is an increasing demand for fast charging and high capacity lithium ion batteries. However, conventional Li-ion battery chemistries cannot meet the stringent requirements of these demands due to the poor performance of graphite anodes, especially on safety during fast charging. Finding the right anode material that can replace conventional graphite while providing high capacity is very challenging. Today, lithium titanium oxide (LTO) is considered one of the most attractive anode materials that can provide the desired ultra-fast charging ability (>10C) with high safety. However, it has many serious drawbacks when compared to the existing graphite anodes, including poor intrinsic conductivity, narrow electrochemical window, etc. Extensive research has been done to overcome these problems, especially in developing new LTO composite materials with reduced graphene oxide. However, even these methods have rapid capacity fading at high current densities, >5C, due to increased internal resistance and polarization losses. Here, we demonstrate an effective way to improve LTO composite materials by developing unique nanoengineered three-dimensional frameworks with hexagonal boron nitride (h-BN) addition. Li-ion cells with h-BN incorporation exhibit excellent performance and operational stability, especially at fast and ultra-fast charging rates, >10C.Publication Open Access A radioenhancing nanoparticle mediated immunoradiation improves survival and generates long-term antitumor immune memory in an anti-PD1-resistant murine lung cancer model(BioMed Central, 2021) Hu, Yun; Paris, Sebastien; Barsoumian, Hampartsoum; Abana, Chike O.; He, Kewen; Wasley, Mark; Masrorpour, Fatemeh; Chen, Dawei; Yang, Liangpeng; Dunn, Joe D.; Gandhi, Saumil; Nguyen, Quynh-Nhu; Cortez, Maria Angelica; Welsh, James W.; Sezen, Duygu; Faculty Member; School of Medicine; 170535Background: combining radiotherapy with PD1 blockade has had impressive antitumor effects in preclinical models of metastatic lung cancer, although anti-PD1 resistance remains problematic. Here, we report results from a triple-combination therapy in which NBTXR3, a clinically approved nanoparticle radioenhancer, is combined with high-dose radiation (HDXRT) to a primary tumor plus low-dose radiation (LDXRT) to a secondary tumor along with checkpoint blockade in a mouse model of anti-PD1-resistant metastatic lung cancer. Methods: mice were inoculated with 344SQR cells in the right legs on day 0 (primary tumor) and the left legs on day 3 (secondary tumor). Immune checkpoint inhibitors (ICIs), including anti-PD1 (200 mu g) and anti-CTLA4 (100 mu g) were given intraperitoneally. Primary tumors were injected with NBTXR3 on day 6 and irradiated with 12-Gy (HDXRT) on days 7, 8, and 9; secondary tumors were irradiated with 1-Gy (LDXRT) on days 12 and 13. The survivor mice at day 178 were rechallenged with 344SQR cells and tumor growth monitored thereafter. Results: NBTXR3 + HDXRT + LDXRT + ICIs had significant antitumor effects against both primary and secondary tumors, improving the survival rate from 0 to 50%. Immune profiling of the secondary tumors revealed that NBTXR3 + HDXRT + LDXRT increased CD8 T-cell infiltration and decreased the number of regulatory T (Treg) cells. Finally, none of the re-challenged mice developed tumors, and they had higher percentages of CD4 memory T cells and CD4 and CD8 T cells in both blood and spleen relative to untreated mice. Conclusions: NBTXR3 nanoparticle in combination with radioimmunotherapy significantly improves anti-PD1 resistant lung tumor control via promoting antitumor immune response.