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Publication Open Access 3D-printed multi-stimuli-responsive mobile micromachines(American Chemical Society (ACS), 2020) Lee, Yun-Woo; Ceylan, Hakan; Yasa, İmmihan Ceren; Department of Mechanical Engineering; Kılıç, Uğur; Sitti, Metin; Faculty Member; Department of Mechanical Engineering; School of Medicine; College of EngineeringMagnetically actuated and controlled mobile micromachines have the potential to be a key enabler for various wireless lab-on-a-chip manipulations and minimally invasive targeted therapies. However, their embodied, or physical, task execution capabilities that rely on magnetic programming and control alone can curtail their projected performance and functional diversity. Integration of stimuli-responsive materials with mobile magnetic micromachines can enhance their design toolbox, enabling independently controlled new functional capabilities to be defined. To this end, here, we show three-dimensional (3D) printed size-controllable hydrogel magnetic microscrews and microrollers that respond to changes in magnetic fields, temperature, pH, and divalent cations. We show two-way size-controllable microscrews that can reversibly swell and shrink with temperature, pH, and divalent cations for multiple cycles. We present the spatial adaptation of these microrollers for penetration through narrow channels and their potential for controlled occlusion of small capillaries (30 μm diameter). We further demonstrate one-way size-controllable microscrews that can swell with temperature up to 65% of their initial length. These hydrogel microscrews, once swollen, however, can only be degraded enzymatically for removal. Our results can inspire future applications of 3D- and 4D-printed multifunctional mobile microrobots for precisely targeted obstructive interventions (e.g., embolization) and lab- and organ-on-a-chip manipulations.Publication Open Access A 2D MEMS stage for optical applications(Society of Photo-optical Instrumentation Engineers (SPIE), 2006) Ataman, Çağlar; Petremand, Yves; Noell, Wilfried; Epitaux, Marc; de Rooij, Nico F.; Department of Electrical and Electronics Engineering; Ürey, Hakan; Faculty Member; Department of Electrical and Electronics Engineering; College of Engineering; 8579A 2D MEMS platform for a microlens scanner application is reported. The platform is fabricated on an SOI wafer with 50/μm thick device layer. Entire device is defined with a single etching step on the same layer. Through four S-shaped beams, the device is capable of producing nonlinear 2D motion from linear ID translation of two pairs of comb actuator sets. The device has a clear aperture of 2mm by 2mm, which is hallowed from the backside for micro-optics assembly. In this paper, a numerical device model and its validation via experimental characterization results are presented. Integration of the micro-optical components with the stage is also discussed. Additionally, a new driving scheme to minimize the settling time of the device in DC operation is explored.Publication Open Access A comparative study on GaSb epilayers grown on nominal and vicinal Si(100) substrates by molecular beam epitaxy(Institute of Physics (IOP) Publishing, 2020) Arpapay, Burcu; Suyolcu, Y. Eren; van Aken, Peter A.; Gülgün, Mehmet Ali; Serincan, Uğur; Çorapçıoğlu, Gülcan; n2STAR-Koç University Nanofabrication and Nanocharacterization Center for Scientifc and Technological Advanced ResearchThe direct growth of GaSb buffer layers on Si substrates is attracting considerable interest in the integration of group III-Sb based device structures on lower-cost Si substrates. Here, we present the effect of various growth steps on the defect types and defect density that are crucial for advancing high crystal quality GaSb buffer layer on nominal/vicinal Si substrate. As a growth step, the applied thermal annealing at an intermediate step provided a decrease in the threading dislocation (TD) density down to 1.72 x 10(8) cm(-2), indicating a more effective method compared to post-growth annealing. Additionally, the importance of period number and position of GaSb/AlSb superlattice layers inserted in GaSb epilayers is demonstrated. In the case of the GaSb epilayers grown on vicinal substrates, the APB density as low as 0.06 mu m(-1) and TD density of 1.98 x 10(8) cm(-2) were obtained for the sample grown on 4 degrees miscut Si(100) substrate.Publication Open Access A machine learning approach for implementing data-driven production control policies(Taylor _ Francis, 2021) Department of Business Administration; N/A; Tan, Barış; Khayyati, Siamak; Faculty Member; Department of Business Administration; College of Administrative Sciences and Economics; Graduate School of Sciences and Engineering; 28600; N/AGiven the extensive data being collected in manufacturing systems, there is a need for developing a systematic method to implement data-driven production control policies. For an effective implementation, first, the relevant information sources must be selected. Then, a control policy that uses the real-time signals collected from these sources must be implemented. We analyse the production control policy implementation problem in three levels: choosing the information sources, forming clusters of information signals to be used by the policy and determining the optimal policy parameters. Due to the search-space size, a machine-learning-based framework is proposed. Using machine learning speeds up optimisation and allows utilising the collected data with simulation. Through two experiments, we show the effectiveness of this approach. In the first experiment, the problem of selecting the right machines and buffers for controlling the release of materials in a production/inventory system is considered. In the second experiment, the best dispatching policy based on the selected information sources is identified. We show that selecting the right information sources and controlling a production system based on the real-time signals from the selected sources with the right policy improve the system performance significantly. Furthermore, the proposed machine learning framework facilitates this task effectively.Publication Open Access A new RIS architecture with a single power amplifier: energy efficiency and error performance analysis(Institute of Electrical and Electronics Engineers (IEEE), 2022) Alexandropoulos, George C.; Department of Electrical and Electronics Engineering; Başar, Ertuğrul; Taşçı, Recep Akif; Kılınç, Fatih; Faculty Member; Master Student; Researcher; Department of Electrical and Electronics Engineering; Graduate School of Sciences and Engineering; College of Engineering; 149116; N/A; N/AMany electrochemical devices are based on the fundamental process of ion migration and accumulation on surfaces. Complex interplay of molecular properties of ions and device dimensions control the entire process and define the overall dynamics of the system. Particularly, for ionic liquid-based electrolytes it is often not clear which property, and to what extent, contributes to the overall performance of the device. Herein we use X-ray photoelectron spectroscopy (XPS) while the device is under electrical bias. Such a procedure reveals localized electrical potential developments, through binding energy shifts of the atomic core levels, in a chemically specific fashion. Combining it with square-wave AC modulation, the information can also be extended to time domain, and we investigate devices configured as a coplanar capacitor, with an ionic liquid as the electrolyte, in macro-dimensions. Our analysis reveals that a nonlinear voltage profile across the device emerges from spatially non-uniform electrical double layer formation on electrode surfaces. Interestingly the coplanar capacitor has an extremely slow time response which is particularly controlled by IL film thickness. XPS measurements can capture the ion dynamics in the tens of seconds to microseconds range, and reveal that ionic motion is all over the device, including on metallic electrode regions. This behavior can only be attributed to motion in more than one dimension. The ion dynamics can also be faithfully simulated by using a modified PNP equation, taking into account steric effects, and device dimensions. XPS measurements on two devices with different dimensions corroborated and validated the simulation results. The present results propose a new experimental approach and provide new insights into the dynamics of ions across electrochemical devices.Publication Open Access A queueing-theoretical delay analysis for intra-body nervous nanonetwork(Elsevier, 2015) Department of Electrical and Electronics Engineering; Abbasi, Naveed Ahmed; Akan, Özgür Barış; Faculty Member; Department of Electrical and Electronics Engineering; College of EngineeringNanonetworks is an emerging field of study where nanomachines communicate to work beyond their individual limited processing capabilities and perform complicated tasks. The human body is an example of a very large nanoscale communication network, where individual constituents communicate by means of molecular nanonetworks. Amongst the various intra-body networks, the nervous system forms the largest and the most complex network. In this paper, we introduce a queueing theory based delay analysis model for neuro-spike communication between two neurons. Using standard queueing model blocks such as servers, queues and fork-join networks, impulse reception and processing through the nervous system is modeled as arrival and service processes in queues. Simulations show that the response time characteristics of the model are comparable to those of the biological neurons.Publication Open Access A wearable paper-integrated microfluidic device for sequential analysis of sweat based on capillary action(Royal Society of Chemistry (RSC), 2022) Koydemir, Hatice Ceylan; Department of Mechanical Engineering; Department of Electrical and Electronics Engineering; Beker, Levent; Abbasiasl, Taher; Mirlou, Fariborz; İstif, Emin; Faculty Member; Department of Mechanical Engineering; Department of Electrical and Electronics Engineering; College of Engineering; Graduate School of Sciences and Engineering; 308798; N/A; N/A; N/ASoft, skin-mounted microfluidic devices can collect microliter volumes of eccrine sweat and are capable of in situ real-time analysis of different biomarkers to assess physiological state and health. Chrono-analysis of sweat can be implemented to monitor temporal variations of biomarker concentrations over a certain period of interest. Conventional methods used to capture sweat or some of the newly developed microfluidic platforms for sweat collection and analysis are based on absorbent pads. They suffer from evaporation, leading to considerable deviations in the concentration of the biomarkers. Here, a paperintegrated microfluidic device is presented for sequential analysis of sweat that is easy to fabricate and does not include air exits for each reservoir, which reduces undesirable effects of sweat evaporation. Furthermore, the high capillary force of filter paper is leveraged to route the liquid into the chambers in a sequential fashion and allow further chemical analysis. The employed design of the paper-embedded microfluidic device successfully samples and analyzes artificial sweat sequentially for flow rates up to 5 ?L min?1 without showing any leakage. We demonstrated the performance of the device, employing colorimetric assays for chrono-analysis of glucose standard solutions at concentrations in the range of 10– 100 mM and pH of sweat during exercise. The results reveal the presented approach's functionality and potential to analyze the concentration of biomarkers over a certain period sequentially.Publication Open Access Accelerating discovery of COFs for CO2 capture and H2 purification using structurally guided computational screening(Elsevier, 2022) Eruçar, İlknur; Department of Chemical and Biological Engineering; Keskin, Seda; Aksu, Gökhan Önder; Haşlak, Zeynep Pınar; Faculty Member; Department of Chemical and Biological Engineering; College of Engineering; Graduate School of Sciences and Engineering; 40548; N/A; N/AScreening of hypothetical covalent organic framework (hypoCOF) database enables to go beyond the current synthesized structures to design high-performance materials for CO2 separation. In this work, we followed a structurally guided computational screening approach to find the most promising candidates of hypoCOF adsorbents and membranes for CO2 capture and H2 purification. Grand canonical Monte Carlo (GCMC) simulations were used to evaluate CO2/H2 separation performance of 3184 hypoCOFs for pressure-swing adsorption (PSA) and vacuum-swing adsorption (VSA) processes. CO2/H2 adsorption selectivities and CO2 working capacities of hypoCOFs were calculated in the range of 6.13–742 (6.39–954) and 0.07–8.68 mol/kg (0.01–3.92 mol/kg), achieving higher values than those of experimentally synthesized COFs at PSA (VSA) conditions. Density functional theory (DFT) calculations revealed that the strength of hydrogen bonding between CO2 and the functional group of linkers is an important factor for determining the CO2 selectivity of hypoCOFs. The most predominant topologies and linker types were identified as bor and pts, linker91 (a triazine linker) and linker92 (a benzene linker) for the top-performing hypoCOF adsorbents, respectively. Molecular dynamics (MD) simulations of 794 hypoCOFs showed that they exceed the Robeson's upper bound by outperforming COF, zeolite, metal organic framework (MOF), and polymer membranes due to their high H2/CO2 selectivities, 2.66–6.14, and high H2 permeabilities, 9×105–4.5×106 Barrer. Results of this work will be useful to guide the synthesis of novel materials by providing molecular-level insights into the structural features of hypothetical COFs to achieve superior CO2 separation performance.
Publication Metadata only Adaptation strategies for MGS scalable video streaming(Elsevier, 2012) N/A; Department of Electrical and Electronics Engineering; Görkemli, Burak; Tekalp, Ahmet Murat; N/A; Faculty Member; Department of Electrical and Electronics Engineering; College of Engineering; College of Engineering; N/A; 26207An adaptive streaming framework consists of a video codec that can produce video encoded at a variety of rates, a transport protocol that supports an effective rate/congestion control mechanism, and an adaptation strategy in order to match the video source rate to the available network throughput. The main parameters of the adaptation strategy are encoder configuration, video extraction method, determination of video extraction rate, send rate control, retransmission of lost packets, decoder buffer status, and packetization method. This paper proposes optimal adaptation strategies, in terms of received video quality and used network resources, at the codec and network levels using a medium grain scalable (MGS) video codec and two transport protocols with built-in congestion control, TCP and DCCP. Key recommendations are presented to obtain the best results in adaptive video streaming using TCP or DCCP based on extensive experimental results over the Internet. (c) 2012 Elsevier B.V. All rights reserved.Publication Metadata only Application of the numerical fractionation approach to the design of biofunctional PEG hydrogel membranes(Wiley-V C H Verlag Gmbh, 2012) N/A; Department of Chemical and Biological Engineering; Department of Chemical and Biological Engineering; Kızılel, Rıza; Kızılel, Seda; Researcher; Faculty Member; Department of Chemical and Biological Engineering; College of Engineering; College of Engineering; 114475; 28376A mathematical model is described for surface-initiated photopolymerization of PEG-DA forming crosslinked biofunctional PEG hydrogel membranes based on the NF technique. The model includes an additional monomer with biological functionality, which is a common experimental strategy for the design of ECM mimics in tissue engineering in order to direct signaling pathways, and considers concentration-dependent VP propagation and reaction diffusion termination. The influence of these features on the crosslink density of the soluble and gel phases, the progression through gelation, sol/gel fraction, and molecular weight distribution of biofunctional PEG hydrogel are studied using the NF model. This model may be useful for specific applications of tissue engineering.